Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JSQ74_RS16165 Genome accession   NZ_CP069710
Coordinates   3382959..3383495 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain EA2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3377959..3388495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ74_RS16145 (JSQ74_16145) aphA 3378248..3378961 (+) 714 WP_204084144.1 acid phosphatase AphA -
  JSQ74_RS16150 (JSQ74_16150) yjbQ 3379072..3379488 (+) 417 WP_204084145.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JSQ74_RS16155 (JSQ74_16155) yjbR 3379492..3379848 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JSQ74_RS16160 (JSQ74_16160) uvrA 3379883..3382705 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JSQ74_RS16165 (JSQ74_16165) ssb 3382959..3383495 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JSQ74_RS16170 (JSQ74_16170) yjcB 3383594..3383875 (-) 282 WP_001295689.1 YjcB family protein -
  JSQ74_RS16175 (JSQ74_16175) pdeC 3384305..3385891 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  JSQ74_RS16180 (JSQ74_16180) soxS 3385894..3386217 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JSQ74_RS16185 (JSQ74_16185) soxR 3386303..3386767 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=536543 JSQ74_RS16165 WP_000168305.1 3382959..3383495(+) (ssb) [Escherichia coli strain EA2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=536543 JSQ74_RS16165 WP_000168305.1 3382959..3383495(+) (ssb) [Escherichia coli strain EA2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489