Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JSQ86_RS07340 | Genome accession | NZ_CP069707 |
| Coordinates | 1504033..1504506 (-) | Length | 157 a.a. |
| NCBI ID | WP_032182883.1 | Uniprot ID | - |
| Organism | Escherichia coli strain E41 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1491186..1538576 | 1504033..1504506 | within | 0 |
Gene organization within MGE regions
Location: 1491186..1538576
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSQ86_RS07245 (JSQ86_07245) | - | 1492049..1494688 (-) | 2640 | WP_113078622.1 | DUF927 domain-containing protein | - |
| JSQ86_RS07250 (JSQ86_07250) | - | 1494685..1495068 (-) | 384 | WP_001075586.1 | DUF5375 family protein | - |
| JSQ86_RS07255 (JSQ86_07255) | - | 1495065..1495349 (-) | 285 | WP_001027154.1 | hypothetical protein | - |
| JSQ86_RS07260 (JSQ86_07260) | - | 1495381..1495740 (-) | 360 | WP_001246994.1 | hypothetical protein | - |
| JSQ86_RS07265 (JSQ86_07265) | - | 1495733..1495909 (-) | 177 | WP_001118612.1 | host cell division inhibitor Icd-like protein | - |
| JSQ86_RS24130 | - | 1496026..1496220 (+) | 195 | WP_000538173.1 | hypothetical protein | - |
| JSQ86_RS07270 (JSQ86_07270) | - | 1496270..1496485 (-) | 216 | WP_000173141.1 | AlpA family phage regulatory protein | - |
| JSQ86_RS07275 (JSQ86_07275) | - | 1496588..1497001 (-) | 414 | WP_251302284.1 | hypothetical protein | - |
| JSQ86_RS24135 | - | 1497830..1498021 (-) | 192 | WP_251302285.1 | hypothetical protein | - |
| JSQ86_RS07290 (JSQ86_07290) | - | 1498276..1499550 (-) | 1275 | WP_000996991.1 | integrase arm-type DNA-binding domain-containing protein | - |
| JSQ86_RS07295 (JSQ86_07295) | torI | 1499823..1500023 (-) | 201 | WP_001163428.1 | response regulator inhibitor TorI | - |
| JSQ86_RS07300 (JSQ86_07300) | - | 1500146..1500490 (-) | 345 | WP_001281193.1 | hypothetical protein | - |
| JSQ86_RS07305 (JSQ86_07305) | - | 1500591..1500770 (-) | 180 | WP_032169734.1 | Eag protein | - |
| JSQ86_RS07310 (JSQ86_07310) | - | 1500867..1501541 (-) | 675 | WP_204098168.1 | DUF551 domain-containing protein | - |
| JSQ86_RS07315 (JSQ86_07315) | - | 1501538..1502134 (-) | 597 | WP_000151156.1 | ead/Ea22-like family protein | - |
| JSQ86_RS07320 (JSQ86_07320) | - | 1502131..1502775 (-) | 645 | WP_204098169.1 | hypothetical protein | - |
| JSQ86_RS07325 (JSQ86_07325) | - | 1502772..1502939 (-) | 168 | WP_001214448.1 | DUF2737 family protein | - |
| JSQ86_RS07330 (JSQ86_07330) | - | 1502936..1503226 (-) | 291 | WP_000855561.1 | DUF5405 family protein | - |
| JSQ86_RS07335 (JSQ86_07335) | - | 1503237..1503530 (-) | 294 | WP_001111298.1 | phage anti-RecBCD protein | - |
| JSQ86_RS07340 (JSQ86_07340) | ssb | 1504033..1504506 (-) | 474 | WP_032182883.1 | single-stranded DNA-binding protein | Machinery gene |
| JSQ86_RS07345 (JSQ86_07345) | - | 1504507..1505214 (-) | 708 | WP_000365280.1 | Rad52/Rad22 family DNA repair protein | - |
| JSQ86_RS07350 (JSQ86_07350) | - | 1505469..1505639 (-) | 171 | WP_001183771.1 | hypothetical protein | - |
| JSQ86_RS07355 (JSQ86_07355) | - | 1505866..1506066 (-) | 201 | WP_204098170.1 | antirestriction Ral family protein | - |
| JSQ86_RS24140 | - | 1506412..1506518 (-) | 107 | Protein_1450 | antitermination protein N | - |
| JSQ86_RS07365 (JSQ86_07365) | - | 1507260..1507946 (-) | 687 | WP_152914768.1 | S24 family peptidase | - |
| JSQ86_RS07370 (JSQ86_07370) | - | 1508055..1508285 (+) | 231 | WP_000391959.1 | YdaS family helix-turn-helix protein | - |
| JSQ86_RS07375 (JSQ86_07375) | - | 1508402..1508683 (+) | 282 | WP_000536662.1 | CII family transcriptional regulator | - |
| JSQ86_RS07380 (JSQ86_07380) | - | 1508718..1508879 (+) | 162 | WP_000166961.1 | hypothetical protein | - |
| JSQ86_RS07385 (JSQ86_07385) | - | 1508866..1509687 (+) | 822 | WP_016063336.1 | replication protein | - |
| JSQ86_RS07390 (JSQ86_07390) | - | 1509684..1511060 (+) | 1377 | WP_001248388.1 | replicative DNA helicase | - |
| JSQ86_RS07395 (JSQ86_07395) | - | 1511133..1511339 (+) | 207 | WP_023351780.1 | hypothetical protein | - |
| JSQ86_RS07400 (JSQ86_07400) | - | 1511357..1511668 (+) | 312 | WP_204098172.1 | hypothetical protein | - |
| JSQ86_RS07405 (JSQ86_07405) | - | 1511671..1512081 (+) | 411 | WP_204098173.1 | recombination protein NinB | - |
| JSQ86_RS07410 (JSQ86_07410) | - | 1512078..1512254 (+) | 177 | WP_021511843.1 | NinE family protein | - |
| JSQ86_RS07415 (JSQ86_07415) | - | 1512257..1512658 (+) | 402 | WP_204098174.1 | hypothetical protein | - |
| JSQ86_RS07420 (JSQ86_07420) | - | 1512618..1512827 (+) | 210 | WP_204098175.1 | protein NinF | - |
| JSQ86_RS07425 (JSQ86_07425) | - | 1512820..1513089 (+) | 270 | WP_016242496.1 | hypothetical protein | - |
| JSQ86_RS07430 (JSQ86_07430) | - | 1513089..1513379 (+) | 291 | Protein_1464 | DUF1364 domain-containing protein | - |
| JSQ86_RS07435 (JSQ86_07435) | - | 1513376..1513738 (+) | 363 | WP_001008199.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JSQ86_RS07440 (JSQ86_07440) | - | 1513735..1513923 (+) | 189 | WP_000994516.1 | protein ninH | - |
| JSQ86_RS07445 (JSQ86_07445) | - | 1513920..1514543 (+) | 624 | WP_001235461.1 | antitermination protein | - |
| JSQ86_RS07450 (JSQ86_07450) | - | 1514976..1515299 (+) | 324 | WP_015966862.1 | phage holin, lambda family | - |
| JSQ86_RS07455 (JSQ86_07455) | - | 1515283..1515759 (+) | 477 | WP_204098176.1 | glycoside hydrolase family protein | - |
| JSQ86_RS07460 (JSQ86_07460) | - | 1515756..1516223 (+) | 468 | WP_204098177.1 | lysis protein | - |
| JSQ86_RS07465 (JSQ86_07465) | - | 1516211..1516363 (+) | 153 | WP_001139680.1 | hypothetical protein | - |
| JSQ86_RS07475 (JSQ86_07475) | - | 1516566..1517051 (+) | 486 | WP_050867239.1 | GIY-YIG nuclease family protein | - |
| JSQ86_RS07480 (JSQ86_07480) | - | 1517230..1517610 (+) | 381 | WP_000999686.1 | Gp49 family protein | - |
| JSQ86_RS07485 (JSQ86_07485) | - | 1517714..1517956 (+) | 243 | WP_000807780.1 | DUF2560 family protein | - |
| JSQ86_RS07490 (JSQ86_07490) | - | 1517959..1518396 (+) | 438 | WP_025765985.1 | hypothetical protein | - |
| JSQ86_RS07495 (JSQ86_07495) | - | 1518396..1519856 (+) | 1461 | WP_001543879.1 | hypothetical protein | - |
| JSQ86_RS07500 (JSQ86_07500) | - | 1519856..1522024 (+) | 2169 | WP_001543878.1 | portal protein | - |
| JSQ86_RS07505 (JSQ86_07505) | - | 1522038..1522949 (+) | 912 | WP_021549561.1 | scaffolding protein | - |
| JSQ86_RS07510 (JSQ86_07510) | - | 1522949..1524244 (+) | 1296 | WP_001196946.1 | P22 phage major capsid protein family protein | - |
| JSQ86_RS07515 (JSQ86_07515) | - | 1524289..1524543 (+) | 255 | WP_062870091.1 | hypothetical protein | - |
| JSQ86_RS07520 (JSQ86_07520) | - | 1524521..1525021 (+) | 501 | WP_001054834.1 | packaged DNA stabilization gp4 family protein | - |
| JSQ86_RS07525 (JSQ86_07525) | - | 1525021..1526439 (+) | 1419 | WP_204098178.1 | packaged DNA stabilization protein gp10 | - |
| JSQ86_RS07530 (JSQ86_07530) | - | 1526443..1527081 (+) | 639 | WP_204098179.1 | phage tail protein | - |
| JSQ86_RS07535 (JSQ86_07535) | - | 1527081..1527536 (+) | 456 | WP_204098180.1 | DUF2824 family protein | - |
| JSQ86_RS07540 (JSQ86_07540) | - | 1527539..1528231 (+) | 693 | WP_074014732.1 | DNA transfer protein | - |
| JSQ86_RS07545 (JSQ86_07545) | - | 1528241..1529572 (+) | 1332 | WP_027662817.1 | phage DNA ejection protein | - |
| JSQ86_RS07550 (JSQ86_07550) | - | 1529573..1531966 (+) | 2394 | WP_204098181.1 | lytic transglycosylase domain-containing protein | - |
| JSQ86_RS07555 (JSQ86_07555) | - | 1532056..1532316 (-) | 261 | WP_000287053.1 | Arc family DNA-binding protein | - |
| JSQ86_RS07560 (JSQ86_07560) | - | 1532438..1534501 (+) | 2064 | WP_204098182.1 | phage head-binding domain-containing protein | - |
| JSQ86_RS07565 (JSQ86_07565) | - | 1534560..1535990 (-) | 1431 | WP_160455551.1 | glucosyltransferase domain-containing protein | - |
| JSQ86_RS07570 (JSQ86_07570) | yfdH | 1535987..1536907 (-) | 921 | WP_113403401.1 | glycosyltransferase family 2 protein | - |
| JSQ86_RS07575 (JSQ86_07575) | yfdG | 1536904..1537266 (-) | 363 | WP_000915536.1 | bactoprenol glucosyl transferase | - |
| JSQ86_RS07580 (JSQ86_07580) | intS | 1537419..1538576 (-) | 1158 | WP_021544678.1 | prophage integrase IntS | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17603.43 Da Isoelectric Point: 7.4024
>NTDB_id=536489 JSQ86_RS07340 WP_032182883.1 1504033..1504506(-) (ssb) [Escherichia coli strain E41]
MGSRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQMLGGKQGGNEQSSPQRNNGQQQRQQSQQHGNHSEPPMNFDDSDIPF
MGSRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQMLGGKQGGNEQSSPQRNNGQQQRQQSQQHGNHSEPPMNFDDSDIPF
Nucleotide
Download Length: 474 bp
>NTDB_id=536489 JSQ86_RS07340 WP_032182883.1 1504033..1504506(-) (ssb) [Escherichia coli strain E41]
ATGGGAAGTAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGGCATGATCCAGAAATCAGATATTCACCATCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAATGGCGTGATAAGCAAACTGGAGAGCAAAAGGAGCAGACGG
AGTGGCACCGTGTGGTAATGAGCGGGAAACTGGCAGAAATTGCCAGCGAATATCTGCGAAAAGGCTCAGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGCGGACAGGATCGGTTCACTACCGAAGTTATCGTAGGCGTTGG
TGGAACCATGCAAATGCTTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAACGGCCAGCAACAAA
GACAGCAATCTCAGCAGCATGGGAATCACAGCGAACCACCTATGAACTTCGACGATTCGGATATTCCGTTCTAG
ATGGGAAGTAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGGCATGATCCAGAAATCAGATATTCACCATCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAATGGCGTGATAAGCAAACTGGAGAGCAAAAGGAGCAGACGG
AGTGGCACCGTGTGGTAATGAGCGGGAAACTGGCAGAAATTGCCAGCGAATATCTGCGAAAAGGCTCAGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGCGGACAGGATCGGTTCACTACCGAAGTTATCGTAGGCGTTGG
TGGAACCATGCAAATGCTTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAACGGCCAGCAACAAA
GACAGCAATCTCAGCAGCATGGGAATCACAGCGAACCACCTATGAACTTCGACGATTCGGATATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
60.335 |
100 |
0.688 |
| ssb | Glaesserella parasuis strain SC1401 |
50.549 |
100 |
0.586 |
| ssb | Neisseria meningitidis MC58 |
41.243 |
100 |
0.465 |
| ssb | Neisseria gonorrhoeae MS11 |
41.243 |
100 |
0.465 |