Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JSU11_RS20480 Genome accession   NZ_CP069682
Coordinates   4212563..4213099 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli O176:H45 strain MIN9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4198615..4237859 4212563..4213099 within 0


Gene organization within MGE regions


Location: 4198615..4237859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSU11_RS20445 (JSU11_20445) yjcB 4200286..4200567 (+) 282 WP_001295689.1 YjcB family protein -
  JSU11_RS20450 (JSU11_20450) - 4200973..4201794 (+) 822 WP_001272931.1 abortive infection system antitoxin AbiGi family protein -
  JSU11_RS20455 (JSU11_20455) avs4 4202332..4207095 (-) 4764 WP_054540921.1 AVAST type 4 anti-phage nuclease Avs4 -
  JSU11_RS20460 (JSU11_20460) - 4207170..4207589 (-) 420 WP_001062124.1 hypothetical protein -
  JSU11_RS20465 (JSU11_20465) - 4207582..4209615 (-) 2034 WP_000807724.1 hypothetical protein -
  JSU11_RS20470 (JSU11_20470) - 4209608..4211170 (-) 1563 WP_021571019.1 site-specific integrase -
  JSU11_RS20475 (JSU11_20475) - 4211157..4212404 (-) 1248 WP_000654660.1 tyrosine-type recombinase/integrase -
  JSU11_RS20480 (JSU11_20480) ssb 4212563..4213099 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JSU11_RS20485 (JSU11_20485) uvrA 4213353..4216175 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  JSU11_RS20490 (JSU11_20490) yjbR 4216210..4216566 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JSU11_RS20495 (JSU11_20495) yjbQ 4216570..4216986 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JSU11_RS20500 (JSU11_20500) aphA 4217097..4217603 (-) 507 Protein_4055 acid phosphatase AphA -
  JSU11_RS20505 (JSU11_20505) - 4217695..4218923 (+) 1229 WP_085959875.1 IS3 family transposase -
  JSU11_RS20510 (JSU11_20510) aphA 4218934..4219146 (-) 213 Protein_4057 acid phosphatase AphA -
  JSU11_RS20515 (JSU11_20515) yjbS 4219548..4219751 (+) 204 WP_001321562.1 protein YjbS -
  JSU11_RS20520 (JSU11_20520) tyrB 4220253..4221446 (-) 1194 WP_000486988.1 aromatic amino acid transaminase -
  JSU11_RS20525 (JSU11_20525) alr 4221699..4222778 (-) 1080 WP_001147328.1 alanine racemase -
  JSU11_RS20530 (JSU11_20530) dnaB 4222831..4224246 (-) 1416 WP_000918363.1 replicative DNA helicase -
  JSU11_RS20535 (JSU11_20535) qorA 4224329..4225312 (+) 984 WP_000235522.1 quinone oxidoreductase -
  JSU11_RS20540 (JSU11_20540) pspG 4225478..4225720 (-) 243 WP_077477730.1 envelope stress response protein PspG -
  JSU11_RS20545 (JSU11_20545) dusA 4225854..4226891 (-) 1038 WP_001362079.1 tRNA dihydrouridine(20/20a) synthase DusA -
  JSU11_RS20550 (JSU11_20550) - 4227252..4228243 (-) 992 Protein_4065 DUF2713 family protein -
  JSU11_RS20555 (JSU11_20555) zur 4228560..4229075 (+) 516 WP_001295691.1 zinc uptake transcriptional repressor Zur -
  JSU11_RS20560 (JSU11_20560) yjbJ 4229117..4229326 (-) 210 WP_001030593.1 CsbD family protein -
  JSU11_RS20565 (JSU11_20565) dinF 4229442..4230767 (-) 1326 WP_001326646.1 MATE family efflux transporter DinF -
  JSU11_RS20570 (JSU11_20570) lexA 4230840..4231448 (-) 609 WP_000646078.1 transcriptional repressor LexA -
  JSU11_RS20575 (JSU11_20575) dgkA 4231558..4231926 (-) 369 WP_000002907.1 diacylglycerol kinase -
  JSU11_RS20580 (JSU11_20580) plsB 4232097..4234520 (+) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  JSU11_RS20585 (JSU11_20585) ubiA 4234675..4235547 (-) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  JSU11_RS20590 (JSU11_20590) ubiC 4235560..4236057 (-) 498 WP_001326644.1 chorismate lyase -
  JSU11_RS20595 (JSU11_20595) - 4236280..4237859 (-) 1580 Protein_4074 SopA family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=536451 JSU11_RS20480 WP_000168305.1 4212563..4213099(-) (ssb) [Escherichia coli O176:H45 strain MIN9]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=536451 JSU11_RS20480 WP_000168305.1 4212563..4213099(-) (ssb) [Escherichia coli O176:H45 strain MIN9]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489