Detailed information NTG0536385

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: JSU14_RS21610
• Genome accession: NZ_CP069657
• Coordinates: 4501834..4502370 (-)
• Length: 178 a.a.
• NCBI ID: WP_000168305.1
• Uniprot ID: A0A9P2PPK2
• Organism: Escherichia coli O89m:H10 strain MIN12
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	4485503..4502370	4501834..4502370	within	0

Gene organization within MGE regions

Location: 4485503..4502370

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JSU14_RS21540 (JSU14_21565)	-	4485503..4486891 (-)	1389	WP_001103168.1	DNA-processing protein DprA	-
JSU14_RS21545 (JSU14_21570)	-	4486888..4489020 (-)	2133	WP_001077932.1	RecQ family ATP-dependent DNA helicase	-
JSU14_RS21550 (JSU14_21575)	-	4489035..4490189 (-)	1155	WP_000118957.1	restriction endonuclease subunit S	-
JSU14_RS21555 (JSU14_21580)	-	4490186..4492327 (-)	2142	WP_034613856.1	N-6 DNA methylase	-
JSU14_RS21560 (JSU14_21585)	-	4492340..4492564 (-)	225	WP_001283160.1	helix-turn-helix domain-containing protein	-
JSU14_RS21565 (JSU14_21590)	-	4492662..4493213 (-)	552	WP_001136617.1	hypothetical protein	-
JSU14_RS21570 (JSU14_21595)	-	4493213..4494355 (-)	1143	WP_001172094.1	helix-turn-helix domain-containing protein	-
JSU14_RS21575 (JSU14_21600)	-	4494416..4494892 (-)	477	WP_208284757.1	protein kinase	-
JSU14_RS21580 (JSU14_21605)	-	4494885..4496894 (-)	2010	WP_001279565.1	hypothetical protein	-
JSU14_RS21585 (JSU14_21610)	-	4496887..4498485 (-)	1599	WP_001050717.1	tyrosine-type recombinase/integrase	-
JSU14_RS21590 (JSU14_21615)	-	4498482..4498835 (-)	354	WP_251361282.1	site-specific integrase	-
JSU14_RS21595 (JSU14_21620)	istB	4498909..4499691 (-)	783	WP_001300609.1	IS21-like element IS100kyp family helper ATPase IstB	-
JSU14_RS21600 (JSU14_21625)	istA	4499688..4500710 (-)	1023	WP_000255944.1	IS21-like element IS100 family transposase	-
JSU14_RS21605 (JSU14_21630)	-	4500777..4501616 (-)	840	WP_251361283.1	hypothetical protein	-
JSU14_RS21610 (JSU14_21635)	ssb	4501834..4502370 (-)	537	WP_000168305.1	single-stranded DNA-binding protein SSB1	Machinery gene

Sequence

Protein

• Length: 178 a.a.
• Molecular weight: 18975.00 Da
• Isoelectric Point: 5.2358

>NTDB_id=536385 JSU14_RS21610 WP_000168305.1 4501834..4502370(-) (ssb) [Escherichia coli O89m:H10 strain MIN12]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide

• Length: 537 bp

>NTDB_id=536385 JSU14_RS21610 WP_000168305.1 4501834..4502370(-) (ssb) [Escherichia coli O89m:H10 strain MIN12]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	74.444	100	0.753
ssb	Glaesserella parasuis strain SC1401	57.923	100	0.596
ssb	Neisseria meningitidis MC58	48.066	100	0.489
ssb	Neisseria gonorrhoeae MS11	48.066	100	0.489