Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JRZ86_RS18310 Genome accession   NZ_CP069598
Coordinates   4043761..4044309 (+) Length   182 a.a.
NCBI ID   WP_024107203.1    Uniprot ID   A0AAP6RYG9
Organism   Dickeya dianthicola strain 16ME21T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4038761..4049309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRZ86_RS18300 (JRZ86_18305) - 4039009..4040553 (+) 1545 WP_223303768.1 sensor domain-containing diguanylate cyclase -
  JRZ86_RS18305 (JRZ86_18310) uvrA 4040674..4043505 (-) 2832 WP_024107202.1 excinuclease ABC subunit UvrA -
  JRZ86_RS18310 (JRZ86_18315) ssb 4043761..4044309 (+) 549 WP_024107203.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JRZ86_RS18315 (JRZ86_18320) - 4044367..4044945 (-) 579 WP_024107204.1 flavin reductase family protein -
  JRZ86_RS18320 (JRZ86_18325) - 4044980..4045279 (-) 300 WP_024107205.1 hypothetical protein -
  JRZ86_RS18325 (JRZ86_18330) - 4045474..4045962 (+) 489 WP_024107206.1 hypothetical protein -
  JRZ86_RS18330 (JRZ86_18335) - 4046245..4046832 (+) 588 WP_024107208.1 DUF4255 domain-containing protein -
  JRZ86_RS18335 (JRZ86_18340) - 4046839..4047684 (+) 846 WP_024107209.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19492.41 Da        Isoelectric Point: 4.9562

>NTDB_id=535943 JRZ86_RS18310 WP_024107203.1 4043761..4044309(+) (ssb) [Dickeya dianthicola strain 16ME21T]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGGAPAGGGTGGNAGDNPQQGGWGQPQQPQQANQFSGGGQSR
PQQSAPMPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=535943 JRZ86_RS18310 WP_024107203.1 4043761..4044309(+) (ssb) [Dickeya dianthicola strain 16ME21T]
ATGGCCAGCAGAGGCGTTAACAAAGTGATACTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACATCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAACGCACCG
AGTGGCACCGCGTCGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAATACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGATCGCTACACCACCGAAGTGGTGGTTGATATCTC
CGGCAGCATGCAGATGCTGGGCGGCCGCACAGGCGGCGGCGGTGCTCCGGCCGGCGGCGGCACGGGCGGCAACGCGGGCG
ACAATCCGCAGCAAGGCGGTTGGGGTCAGCCGCAGCAGCCGCAGCAGGCTAACCAGTTCAGCGGCGGCGGTCAGTCCCGT
CCGCAGCAAAGCGCGCCGATGCCGAGCAACGAGCCGCCGATGGATTTTGATGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.863

100

0.753
  ssb Glaesserella parasuis strain SC1401

56.284

100

0.566
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.473
  ssb Neisseria meningitidis MC58

45.213

100

0.467