Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JRZ83_RS04730 | Genome accession | NZ_CP069596 |
| Coordinates | 1011026..1011508 (+) | Length | 160 a.a. |
| NCBI ID | WP_024108351.1 | Uniprot ID | - |
| Organism | Dickeya dianthicola strain 16SBJ16 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 996853..1072885 | 1011026..1011508 | within | 0 |
Gene organization within MGE regions
Location: 996853..1072885
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRZ83_RS04655 (JRZ83_04655) | - | 996960..997847 (+) | 888 | WP_024108180.1 | ParA family protein | - |
| JRZ83_RS04660 (JRZ83_04660) | - | 997840..998865 (+) | 1026 | WP_024108181.1 | hypothetical protein | - |
| JRZ83_RS04665 (JRZ83_04665) | - | 998849..999220 (+) | 372 | WP_024108182.1 | hypothetical protein | - |
| JRZ83_RS04670 (JRZ83_04670) | - | 999217..999627 (+) | 411 | WP_024108183.1 | hypothetical protein | - |
| JRZ83_RS04675 (JRZ83_04675) | dnaB-PI | 999656..1000993 (+) | 1338 | WP_026594635.1 | SPI-7-type island replicative DNA helicase | - |
| JRZ83_RS04680 (JRZ83_04680) | - | 1000993..1002750 (+) | 1758 | WP_026594636.1 | ParB family protein | - |
| JRZ83_RS04685 (JRZ83_04685) | - | 1002740..1002988 (+) | 249 | WP_024108186.1 | TraR/DksA C4-type zinc finger protein | - |
| JRZ83_RS04690 (JRZ83_04690) | - | 1002981..1003730 (+) | 750 | WP_024108187.1 | DUF2786 domain-containing protein | - |
| JRZ83_RS04695 (JRZ83_04695) | - | 1003809..1004384 (+) | 576 | WP_024108188.1 | DUF2857 domain-containing protein | - |
| JRZ83_RS04700 (JRZ83_04700) | - | 1004381..1004632 (+) | 252 | WP_226066810.1 | hypothetical protein | - |
| JRZ83_RS04705 (JRZ83_04705) | - | 1004677..1005924 (+) | 1248 | WP_024108190.1 | STY4528 family pathogenicity island replication protein | - |
| JRZ83_RS04710 (JRZ83_04710) | - | 1006666..1007442 (+) | 777 | WP_024108347.1 | PFL_4669 family integrating conjugative element protein | - |
| JRZ83_RS04715 (JRZ83_04715) | - | 1007439..1009463 (+) | 2025 | WP_024108348.1 | DNA topoisomerase III | - |
| JRZ83_RS04720 (JRZ83_04720) | - | 1010161..1010640 (+) | 480 | WP_024108349.1 | STY4534 family ICE replication protein | - |
| JRZ83_RS04725 (JRZ83_04725) | - | 1010720..1010947 (+) | 228 | WP_024108350.1 | hypothetical protein | - |
| JRZ83_RS04730 (JRZ83_04730) | ssb | 1011026..1011508 (+) | 483 | WP_024108351.1 | single-stranded DNA-binding protein | Machinery gene |
| JRZ83_RS04735 (JRZ83_04735) | - | 1012123..1014003 (+) | 1881 | WP_024108352.1 | reverse transcriptase domain-containing protein | - |
| JRZ83_RS04740 (JRZ83_04740) | - | 1014236..1014739 (+) | 504 | WP_147363568.1 | hypothetical protein | - |
| JRZ83_RS04745 (JRZ83_04745) | - | 1014879..1015310 (+) | 432 | WP_024108354.1 | DUF29 domain-containing protein | - |
| JRZ83_RS04750 (JRZ83_04750) | - | 1015450..1016649 (+) | 1200 | WP_051125463.1 | TcpQ domain-containing protein | - |
| JRZ83_RS04755 (JRZ83_04755) | pilM | 1016651..1017088 (+) | 438 | WP_103415841.1 | type IV pilus biogenesis protein PilM | - |
| JRZ83_RS04760 (JRZ83_04760) | - | 1017165..1018793 (+) | 1629 | WP_051125478.1 | PilN family type IVB pilus formation outer membrane protein | - |
| JRZ83_RS04765 (JRZ83_04765) | pilO2 | 1018801..1020087 (+) | 1287 | WP_024108357.1 | type 4b pilus protein PilO2 | - |
| JRZ83_RS04770 (JRZ83_04770) | pilP | 1020074..1020574 (+) | 501 | WP_024108358.1 | type IV pilus biogenesis protein PilP | - |
| JRZ83_RS04775 (JRZ83_04775) | - | 1020585..1022141 (+) | 1557 | WP_024108359.1 | ATPase, T2SS/T4P/T4SS family | - |
| JRZ83_RS04780 (JRZ83_04780) | - | 1022134..1023243 (+) | 1110 | WP_024108360.1 | type II secretion system F family protein | - |
| JRZ83_RS04785 (JRZ83_04785) | - | 1023253..1023831 (+) | 579 | WP_024108361.1 | type 4 pilus major pilin | - |
| JRZ83_RS04790 (JRZ83_04790) | - | 1023837..1024319 (+) | 483 | WP_026594661.1 | lytic transglycosylase domain-containing protein | - |
| JRZ83_RS04795 (JRZ83_04795) | - | 1024352..1024969 (+) | 618 | WP_147363567.1 | prepilin peptidase | - |
| JRZ83_RS04800 (JRZ83_04800) | pilV | 1024972..1026207 (+) | 1236 | WP_024108364.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| JRZ83_RS04805 (JRZ83_04805) | - | 1026226..1026735 (-) | 510 | WP_024108365.1 | cysteinyl-tRNA synthetase | - |
| JRZ83_RS04810 (JRZ83_04810) | - | 1026732..1027760 (-) | 1029 | WP_024108366.1 | ATP-binding protein | - |
| JRZ83_RS04815 (JRZ83_04815) | - | 1028157..1029065 (+) | 909 | WP_024108367.1 | hypothetical protein | - |
| JRZ83_RS04820 (JRZ83_04820) | - | 1029070..1029804 (+) | 735 | WP_024108368.1 | TIGR03759 family integrating conjugative element protein | - |
| JRZ83_RS04825 (JRZ83_04825) | - | 1029834..1030382 (+) | 549 | WP_232483770.1 | transglycosylase SLT domain-containing protein | - |
| JRZ83_RS04830 (JRZ83_04830) | - | 1030379..1030900 (+) | 522 | WP_024108370.1 | integrating conjugative element protein | - |
| JRZ83_RS04835 (JRZ83_04835) | - | 1030903..1031223 (+) | 321 | WP_024108371.1 | hypothetical protein | - |
| JRZ83_RS04840 (JRZ83_04840) | traD | 1031213..1033297 (+) | 2085 | WP_024108372.1 | type IV conjugative transfer system coupling protein TraD | - |
| JRZ83_RS04845 (JRZ83_04845) | - | 1033297..1034070 (+) | 774 | WP_024108373.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| JRZ83_RS04850 (JRZ83_04850) | - | 1034083..1034274 (+) | 192 | WP_024108374.1 | hypothetical protein | - |
| JRZ83_RS04855 (JRZ83_04855) | - | 1034365..1034694 (+) | 330 | WP_024108375.1 | RAQPRD family integrative conjugative element protein | - |
| JRZ83_RS04860 (JRZ83_04860) | - | 1034694..1034936 (+) | 243 | WP_051125464.1 | TIGR03758 family integrating conjugative element protein | - |
| JRZ83_RS04865 (JRZ83_04865) | - | 1034956..1035294 (+) | 339 | WP_024108377.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| JRZ83_RS04870 (JRZ83_04870) | - | 1035311..1035679 (+) | 369 | WP_024108378.1 | TIGR03750 family conjugal transfer protein | - |
| JRZ83_RS04875 (JRZ83_04875) | - | 1035682..1036341 (+) | 660 | WP_024108379.1 | PFL_4703 family integrating conjugative element protein | - |
| JRZ83_RS04880 (JRZ83_04880) | - | 1036338..1037246 (+) | 909 | WP_024108380.1 | TIGR03749 family integrating conjugative element protein | - |
| JRZ83_RS04885 (JRZ83_04885) | - | 1037258..1038772 (+) | 1515 | WP_024108381.1 | TIGR03752 family integrating conjugative element protein | - |
| JRZ83_RS04890 (JRZ83_04890) | - | 1038784..1039197 (+) | 414 | WP_024108382.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| JRZ83_RS04895 (JRZ83_04895) | - | 1039197..1042016 (+) | 2820 | WP_024108383.1 | conjugative transfer ATPase | - |
| JRZ83_RS04900 (JRZ83_04900) | - | 1042025..1042441 (+) | 417 | WP_232483767.1 | hypothetical protein | - |
| JRZ83_RS04905 (JRZ83_04905) | - | 1042582..1043568 (-) | 987 | WP_024108385.1 | caspase family protein | - |
| JRZ83_RS04910 (JRZ83_04910) | - | 1043568..1043978 (-) | 411 | WP_024108386.1 | TIR domain-containing protein | - |
| JRZ83_RS04915 (JRZ83_04915) | - | 1044316..1044717 (+) | 402 | WP_024108387.1 | TIGR03757 family integrating conjugative element protein | - |
| JRZ83_RS04920 (JRZ83_04920) | - | 1044720..1045703 (+) | 984 | WP_024108388.1 | TIGR03756 family integrating conjugative element protein | - |
| JRZ83_RS04925 (JRZ83_04925) | - | 1045751..1047094 (+) | 1344 | WP_232483771.1 | integrating conjugative element protein | - |
| JRZ83_RS04930 (JRZ83_04930) | - | 1047181..1047453 (+) | 273 | WP_051125465.1 | hypothetical protein | - |
| JRZ83_RS04935 (JRZ83_04935) | - | 1047467..1049017 (+) | 1551 | WP_035044552.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| JRZ83_RS04940 (JRZ83_04940) | - | 1049064..1049375 (-) | 312 | WP_024108391.1 | hypothetical protein | - |
| JRZ83_RS04945 (JRZ83_04945) | - | 1049514..1049653 (+) | 140 | Protein_967 | IS3 family transposase | - |
| JRZ83_RS04950 (JRZ83_04950) | - | 1049849..1053472 (+) | 3624 | WP_024108392.1 | AAA domain-containing protein | - |
| JRZ83_RS04955 (JRZ83_04955) | - | 1053604..1053981 (+) | 378 | WP_024108393.1 | hypothetical protein | - |
| JRZ83_RS04960 (JRZ83_04960) | - | 1053987..1054196 (+) | 210 | WP_232483769.1 | DUF2726 domain-containing protein | - |
| JRZ83_RS04965 (JRZ83_04965) | - | 1055393..1056283 (+) | 891 | WP_024108394.1 | integrase domain-containing protein | - |
| JRZ83_RS04970 (JRZ83_04970) | - | 1056944..1057225 (+) | 282 | WP_024108396.1 | hypothetical protein | - |
| JRZ83_RS04975 (JRZ83_04975) | - | 1057564..1057935 (+) | 372 | WP_024108398.1 | glycosyltransferase | - |
| JRZ83_RS04980 (JRZ83_04980) | - | 1058384..1058869 (+) | 486 | WP_024108399.1 | hypothetical protein | - |
| JRZ83_RS04985 (JRZ83_04985) | - | 1058944..1060899 (+) | 1956 | WP_024108400.1 | zincin-like metallopeptidase domain-containing protein | - |
| JRZ83_RS04990 (JRZ83_04990) | - | 1060977..1061897 (+) | 921 | WP_024108401.1 | hypothetical protein | - |
| JRZ83_RS04995 (JRZ83_04995) | - | 1061929..1062159 (-) | 231 | WP_024108402.1 | hypothetical protein | - |
| JRZ83_RS05000 (JRZ83_05000) | - | 1062228..1062497 (-) | 270 | WP_024108403.1 | hypothetical protein | - |
| JRZ83_RS05005 (JRZ83_05005) | - | 1062831..1063523 (-) | 693 | WP_024108404.1 | DUF2786 domain-containing protein | - |
| JRZ83_RS05010 (JRZ83_05010) | - | 1063748..1064080 (-) | 333 | WP_147363566.1 | hypothetical protein | - |
| JRZ83_RS05015 (JRZ83_05015) | - | 1064085..1064849 (-) | 765 | WP_024108407.1 | hypothetical protein | - |
| JRZ83_RS05020 (JRZ83_05020) | - | 1064904..1065356 (-) | 453 | WP_024108408.1 | hypothetical protein | - |
| JRZ83_RS05025 (JRZ83_05025) | - | 1065456..1065749 (-) | 294 | WP_024108409.1 | hypothetical protein | - |
| JRZ83_RS22270 | - | 1065746..1065928 (-) | 183 | WP_071599217.1 | hypothetical protein | - |
| JRZ83_RS05030 (JRZ83_05030) | - | 1065932..1067002 (-) | 1071 | WP_024108410.1 | hypothetical protein | - |
| JRZ83_RS05035 (JRZ83_05035) | - | 1067060..1068265 (-) | 1206 | WP_024108411.1 | conjugal transfer protein TraF | - |
| JRZ83_RS05040 (JRZ83_05040) | - | 1068373..1069266 (-) | 894 | WP_024108412.1 | hypothetical protein | - |
| JRZ83_RS05045 (JRZ83_05045) | - | 1069457..1070032 (-) | 576 | WP_147363565.1 | hypothetical protein | - |
| JRZ83_RS05050 (JRZ83_05050) | - | 1070134..1071642 (+) | 1509 | WP_071703473.1 | TraI domain-containing protein | - |
| JRZ83_RS05055 (JRZ83_05055) | - | 1071654..1072610 (+) | 957 | WP_024108415.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17732.74 Da Isoelectric Point: 5.2358
>NTDB_id=535892 JRZ83_RS04730 WP_024108351.1 1011026..1011508(+) (ssb) [Dickeya dianthicola strain 16SBJ16]
MSARGVNKVILIGFLGQDPEVRSMPNGTAVTGFQIATSETWRDKQSGEQKERTEWHRISLYGKLAEIAGQYLRKGSQVYI
EGQLRTRKWQDNNGVDRWTTEVVVSQQGTMQMLGKANEGNQNAASSWGQPQQPAAPAMSGTPTQSMGNEPPMDFDDDIPF
MSARGVNKVILIGFLGQDPEVRSMPNGTAVTGFQIATSETWRDKQSGEQKERTEWHRISLYGKLAEIAGQYLRKGSQVYI
EGQLRTRKWQDNNGVDRWTTEVVVSQQGTMQMLGKANEGNQNAASSWGQPQQPAAPAMSGTPTQSMGNEPPMDFDDDIPF
Nucleotide
Download Length: 483 bp
>NTDB_id=535892 JRZ83_RS04730 WP_024108351.1 1011026..1011508(+) (ssb) [Dickeya dianthicola strain 16SBJ16]
ATGTCTGCACGCGGTGTTAACAAAGTAATCCTGATTGGCTTCCTGGGACAGGATCCGGAAGTTCGGTCTATGCCAAACGG
GACTGCAGTAACAGGATTTCAGATTGCAACGTCAGAAACCTGGCGTGACAAGCAAAGCGGGGAACAGAAAGAGCGGACCG
AATGGCATCGTATCTCTCTGTACGGCAAATTGGCTGAGATTGCTGGGCAATATTTACGTAAAGGCTCACAGGTCTATATT
GAAGGCCAGTTGCGTACCCGTAAATGGCAAGACAATAACGGCGTTGATCGCTGGACGACTGAAGTTGTTGTGTCTCAGCA
GGGCACTATGCAAATGCTGGGCAAAGCCAATGAGGGTAACCAGAATGCAGCAAGCAGTTGGGGACAACCTCAGCAGCCTG
CCGCACCGGCAATGAGCGGAACGCCGACTCAATCCATGGGGAATGAACCCCCGATGGATTTTGACGACGACATACCGTTC
TGA
ATGTCTGCACGCGGTGTTAACAAAGTAATCCTGATTGGCTTCCTGGGACAGGATCCGGAAGTTCGGTCTATGCCAAACGG
GACTGCAGTAACAGGATTTCAGATTGCAACGTCAGAAACCTGGCGTGACAAGCAAAGCGGGGAACAGAAAGAGCGGACCG
AATGGCATCGTATCTCTCTGTACGGCAAATTGGCTGAGATTGCTGGGCAATATTTACGTAAAGGCTCACAGGTCTATATT
GAAGGCCAGTTGCGTACCCGTAAATGGCAAGACAATAACGGCGTTGATCGCTGGACGACTGAAGTTGTTGTGTCTCAGCA
GGGCACTATGCAAATGCTGGGCAAAGCCAATGAGGGTAACCAGAATGCAGCAAGCAGTTGGGGACAACCTCAGCAGCCTG
CCGCACCGGCAATGAGCGGAACGCCGACTCAATCCATGGGGAATGAACCCCCGATGGATTTTGACGACGACATACCGTTC
TGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
64.972 |
100 |
0.719 |
| ssb | Glaesserella parasuis strain SC1401 |
49.171 |
100 |
0.556 |
| ssb | Neisseria meningitidis MC58 |
45.556 |
100 |
0.513 |
| ssb | Neisseria gonorrhoeae MS11 |
45.556 |
100 |
0.513 |