Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JN756_RS28820 Genome accession   NZ_CP069594
Coordinates   6323553..6324068 (-) Length   171 a.a.
NCBI ID   WP_017849542.1    Uniprot ID   A0A6I3WGC1
Organism   Pseudomonas sp. Y39-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6318553..6329068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN756_RS28800 (JN756_28610) - 6319981..6320952 (-) 972 WP_046482562.1 GlxA family transcriptional regulator -
  JN756_RS28805 (JN756_28615) - 6321050..6321610 (+) 561 WP_169881740.1 cysteine hydrolase family protein -
  JN756_RS28810 (JN756_28620) tam 6321632..6322393 (-) 762 WP_046381880.1 trans-aconitate 2-methyltransferase -
  JN756_RS28815 (JN756_28625) - 6322646..6323470 (+) 825 WP_057005471.1 alpha/beta hydrolase -
  JN756_RS28820 (JN756_28630) ssb 6323553..6324068 (-) 516 WP_017849542.1 single-stranded DNA-binding protein Machinery gene
  JN756_RS28825 (JN756_28635) - 6324078..6325472 (-) 1395 WP_046381879.1 MFS transporter -
  JN756_RS28830 (JN756_28640) uvrA 6325651..6328485 (+) 2835 WP_017849544.1 excinuclease ABC subunit UvrA -
  JN756_RS28835 (JN756_28645) bfr 6328552..6329016 (-) 465 WP_017848805.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18989.15 Da        Isoelectric Point: 5.9455

>NTDB_id=535863 JN756_RS28820 WP_017849542.1 6323553..6324068(-) (ssb) [Pseudomonas sp. Y39-6]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=535863 JN756_RS28820 WP_017849542.1 6323553..6324068(-) (ssb) [Pseudomonas sp. Y39-6]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTGGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCGCGTCCGCAGCCAAGCCAGCAACCACAGCGTGAGTCGCGCCCAGCGCCACAGCAGGCCGCTCCGCAACCGGCTGCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I3WGC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.286

100

0.596
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.503
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.503
  ssb Neisseria meningitidis MC58

46.591

100

0.48