Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   I6J46_RS02990 Genome accession   NZ_CP069586
Coordinates   636727..637506 (-) Length   259 a.a.
NCBI ID   WP_005067082.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 631727..642506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS02970 (I6J46_02970) aroB 632307..633389 (-) 1083 WP_005067096.1 3-dehydroquinate synthase -
  I6J46_RS02975 (I6J46_02975) aroK 633418..633987 (-) 570 WP_002116987.1 shikimate kinase AroK -
  I6J46_RS02980 (I6J46_02980) pilQ 633999..636125 (-) 2127 WP_204085554.1 type IV pilus secretin PilQ Machinery gene
  I6J46_RS02985 (I6J46_02985) pilP 636188..636715 (-) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  I6J46_RS02990 (I6J46_02990) pilO 636727..637506 (-) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6J46_RS02995 (I6J46_02995) pilN 637503..638144 (-) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  I6J46_RS03000 (I6J46_03000) pilM 638144..639202 (-) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  I6J46_RS03005 (I6J46_03005) ponA 639364..641925 (+) 2562 WP_032004891.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29421.52 Da        Isoelectric Point: 5.7456

>NTDB_id=535768 I6J46_RS02990 WP_005067082.1 636727..637506(-) (pilO) [Acinetobacter pittii strain FDAARGOS_1216]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENQNNSDPQVINGESQI
NASDSRNAHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=535768 I6J46_RS02990 WP_005067082.1 636727..637506(-) (pilO) [Acinetobacter pittii strain FDAARGOS_1216]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGACATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTATTGGCTTTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTATTGTTGAAGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGTTATATGGGCGCGGTTGAAAACCAAAATAATAGTGATCCTCAAGTAATAAATGGTGAAAGTCAGATA
AACGCCTCCGATAGCCGTAATGCACATATTCCTTCTATAAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.732

86.486

0.776
  comO Acinetobacter baylyi ADP1

71.983

89.575

0.645