Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I6J46_RS02995 Genome accession   NZ_CP069586
Coordinates   637503..638144 (-) Length   213 a.a.
NCBI ID   WP_032004890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 632503..643144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS02975 (I6J46_02975) aroK 633418..633987 (-) 570 WP_002116987.1 shikimate kinase AroK -
  I6J46_RS02980 (I6J46_02980) pilQ 633999..636125 (-) 2127 WP_204085554.1 type IV pilus secretin PilQ Machinery gene
  I6J46_RS02985 (I6J46_02985) pilP 636188..636715 (-) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  I6J46_RS02990 (I6J46_02990) pilO 636727..637506 (-) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6J46_RS02995 (I6J46_02995) pilN 637503..638144 (-) 642 WP_032004890.1 PilN domain-containing protein Machinery gene
  I6J46_RS03000 (I6J46_03000) pilM 638144..639202 (-) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  I6J46_RS03005 (I6J46_03005) ponA 639364..641925 (+) 2562 WP_032004891.1 penicillin-binding protein PBP1a -
  I6J46_RS03010 (I6J46_03010) rrmA 641980..642804 (-) 825 WP_204085555.1 putative RNA methyltransferase -
  I6J46_RS03015 (I6J46_03015) - 642807..643139 (-) 333 WP_002116981.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23907.33 Da        Isoelectric Point: 5.4186

>NTDB_id=535769 I6J46_RS02995 WP_032004890.1 637503..638144(-) (pilN) [Acinetobacter pittii strain FDAARGOS_1216]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=535769 I6J46_RS02995 WP_032004890.1 637503..638144(-) (pilN) [Acinetobacter pittii strain FDAARGOS_1216]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAACGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685