Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LG939_RS01075 Genome accession   NZ_CP084738
Coordinates   212445..213761 (-) Length   438 a.a.
NCBI ID   WP_011000296.1    Uniprot ID   Q8Y2K3
Organism   Ralstonia pseudosolanacearum strain RS639     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 207445..218761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG939_RS01050 (LG939_01055) - 208381..209871 (+) 1491 WP_064047598.1 tyrosinase family protein -
  LG939_RS01055 (LG939_01060) - 209918..210394 (+) 477 WP_016724227.1 hypothetical protein -
  LG939_RS01060 (LG939_01065) - 210536..211096 (-) 561 WP_020371576.1 hypothetical protein -
  LG939_RS01065 (LG939_01070) - 211196..211711 (+) 516 WP_016724225.1 O-acetyl-ADP-ribose deacetylase -
  LG939_RS01070 (LG939_01075) - 211815..212366 (+) 552 WP_029240201.1 TlpA disulfide reductase family protein -
  LG939_RS01075 (LG939_01080) luxO 212445..213761 (-) 1317 WP_011000296.1 sigma-54 dependent transcriptional regulator Regulator
  LG939_RS01080 (LG939_01085) - 213787..215784 (-) 1998 WP_019717467.1 sensor histidine kinase -
  LG939_RS01085 (LG939_01090) - 215888..217174 (-) 1287 WP_011000294.1 dicarboxylate/amino acid:cation symporter -
  LG939_RS01090 (LG939_01095) - 217590..217916 (+) 327 WP_011000293.1 ferredoxin -
  LG939_RS01095 (LG939_01100) - 217940..218587 (+) 648 WP_011000292.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 47969.94 Da        Isoelectric Point: 6.0824

>NTDB_id=535546 LG939_RS01075 WP_011000296.1 212445..213761(-) (luxO) [Ralstonia pseudosolanacearum strain RS639]
MSEGLNVLFIEDDPPVRQATAQSLELAGFQVQAYASAEEAVGRIDADFYGVVVSDLRLPGASGLDVLAHCQSFGTGIPVV
LVTGHGDITMAVQAMRDGAFDFIEKPFPAERLTETVRRAVERRALELENRALRRELAGPAAGTRIIGRSQAMASVRALID
NVAATDAPVLINGETGTGKELVARSLHTLSPRHDKPFIALNCGAVPEQIFESEMFGHEAGAFTGAGKRRIGKIEHASGGT
LFLDEIESMPLALQVKLLRVLQEGMLERLGSNASVRIDVRIVAAAKGDMEALIEAGGFRRDLYYRLNVVAIDLPPLRERR
EDIIPLFEHFLLEAAVRYQRPLPMLSERQRHELMQSNWPGNVRELRNAADRLVLGVGRTPVVSDAAEDGMPLKERVERYE
RTVIAETLARTGGSVHQAADILQVGRATLYDKIKRYGL

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=535546 LG939_RS01075 WP_011000296.1 212445..213761(-) (luxO) [Ralstonia pseudosolanacearum strain RS639]
ATGTCCGAAGGCTTGAACGTTCTCTTCATCGAAGACGATCCGCCCGTCCGCCAGGCCACCGCGCAGAGCCTGGAGCTTGC
CGGCTTCCAGGTCCAGGCCTACGCCAGCGCCGAGGAGGCGGTCGGCCGGATCGACGCCGATTTCTACGGCGTGGTCGTCA
GCGACCTGCGCCTGCCGGGCGCCAGCGGGCTCGACGTGCTGGCGCATTGCCAGTCGTTCGGCACCGGCATTCCGGTGGTG
CTCGTGACCGGCCACGGCGATATCACGATGGCCGTGCAGGCGATGCGCGACGGCGCGTTCGATTTCATCGAGAAGCCGTT
CCCCGCCGAGCGCCTGACCGAGACCGTGCGCCGCGCCGTCGAGCGCCGCGCGCTGGAGCTGGAAAACCGCGCCCTGCGCC
GCGAGCTGGCGGGGCCGGCGGCGGGCACGCGCATCATCGGCCGCTCCCAGGCGATGGCCTCGGTGCGCGCGCTGATCGAT
AACGTGGCCGCCACCGACGCGCCGGTGCTCATCAACGGCGAGACCGGCACCGGCAAGGAACTGGTCGCGCGCAGCCTGCA
CACGCTGTCGCCGCGCCACGACAAGCCGTTCATCGCGCTGAACTGCGGCGCGGTGCCCGAGCAGATCTTCGAGAGCGAGA
TGTTCGGCCATGAGGCCGGCGCCTTCACCGGCGCGGGCAAGCGGCGCATCGGCAAGATCGAGCACGCCTCGGGCGGCACG
CTCTTCCTCGACGAGATCGAGAGCATGCCGCTGGCGCTGCAGGTCAAGCTGCTGCGCGTGCTGCAGGAGGGCATGCTCGA
GCGCCTGGGCTCCAACGCCTCGGTGCGCATCGACGTGCGCATCGTCGCCGCCGCCAAGGGCGACATGGAGGCGCTGATCG
AGGCCGGCGGCTTCCGGCGCGACCTGTACTATCGCCTGAACGTCGTCGCCATCGACCTGCCGCCGCTGCGCGAGCGCCGC
GAAGACATCATCCCGCTGTTCGAGCACTTCCTGCTGGAGGCCGCCGTGCGCTATCAGCGTCCGTTGCCGATGCTGTCCGA
GCGCCAACGGCACGAACTGATGCAATCGAACTGGCCCGGCAACGTGCGCGAGCTGCGCAATGCCGCCGATCGCCTGGTGC
TGGGCGTCGGCCGCACGCCCGTCGTCTCCGATGCGGCGGAAGACGGCATGCCGCTCAAGGAGCGGGTCGAGCGCTACGAG
CGCACGGTGATCGCGGAGACGCTGGCGCGCACCGGTGGCTCCGTCCACCAGGCCGCCGACATCCTGCAGGTCGGGCGCGC
GACGCTGTACGACAAGATCAAGCGCTACGGCCTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Bacterial regulatory protein, Fis family (HTH_8)

(397-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

38.626

96.347

0.372
  pilR Pseudomonas aeruginosa PAK

36.303

100

0.372