Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   I6J77_RS03145 Genome accession   NZ_CP069535
Coordinates   721912..722970 (+) Length   352 a.a.
NCBI ID   WP_056718462.1    Uniprot ID   A0AAW3KFR0
Organism   Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 716912..727970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J77_RS03130 (I6J77_03130) - 717012..718307 (+) 1296 WP_007807225.1 citrate synthase -
  I6J77_RS03135 (I6J77_03135) - 718372..719046 (-) 675 WP_204110527.1 hypothetical protein -
  I6J77_RS03140 (I6J77_03140) - 719114..721639 (-) 2526 WP_204110528.1 penicillin-binding protein 1A -
  I6J77_RS03145 (I6J77_03145) pilM 721912..722970 (+) 1059 WP_056718462.1 pilus assembly protein PilM Machinery gene
  I6J77_RS03150 (I6J77_03150) - 722970..723689 (+) 720 WP_056718461.1 PilN domain-containing protein -
  I6J77_RS03155 (I6J77_03155) - 723692..724351 (+) 660 WP_204110529.1 type 4a pilus biogenesis protein PilO -
  I6J77_RS03160 (I6J77_03160) - 724348..724893 (+) 546 WP_204110530.1 pilus assembly protein PilP -
  I6J77_RS03165 (I6J77_03165) pilQ 724949..727111 (+) 2163 WP_204110531.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37905.48 Da        Isoelectric Point: 4.5203

>NTDB_id=535385 I6J77_RS03145 WP_056718462.1 721912..722970(+) (pilM) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
MGLFTPKKPALIGVDISSTAVKLLQLSQAGGRYRVEHYAVEPLPPNAVVEKNIVEIEAVGDAIRRALARSGSKLKHAAAA
VAGSAVITRIIPMTSELSDDDLEGQIQVEANQYIPYPIDEVSLDYEVLGPVRDNPDMNNVLLAASRTENVDMRVAALDLG
GLTAAVIDVEAFAMENAFAMIADQLNVSREALVAVVDIGATMTTLSVLRNQRTIYSREQVFGGKQLTDEIMRRFGLSYEE
AGRAKRKGGLPESYETEALEPFKESLIQQISRLLQFFFAGSEYSKVDQVVLAGGCASIEGLGPMLEEQLGVPCVVANPLA
RMSLSPRVQAQSLAQDAPALMIAVGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=535385 I6J77_RS03145 WP_056718462.1 721912..722970(+) (pilM) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
GTGGGGCTCTTTACACCGAAGAAGCCGGCGCTGATTGGTGTCGACATCAGTTCGACTGCCGTCAAGCTGCTGCAGCTAAG
TCAGGCGGGTGGCCGTTATCGCGTGGAGCACTACGCGGTCGAGCCACTGCCGCCGAACGCCGTGGTCGAGAAGAACATCG
TCGAGATCGAGGCGGTGGGTGATGCGATTCGTCGCGCGCTGGCACGCTCGGGCTCCAAGCTCAAGCACGCCGCTGCGGCG
GTGGCCGGCTCCGCCGTGATCACCCGCATCATCCCGATGACCAGCGAGTTGTCCGACGACGATCTGGAAGGCCAGATCCA
GGTCGAGGCGAACCAGTACATCCCGTATCCGATCGACGAAGTCAGTCTCGATTACGAGGTGCTCGGCCCGGTCCGCGACA
ACCCCGACATGAACAACGTGCTGCTGGCGGCCTCGCGCACCGAGAACGTCGACATGCGGGTGGCCGCGCTGGACCTGGGC
GGACTCACCGCCGCGGTGATCGACGTGGAGGCGTTCGCGATGGAGAACGCCTTCGCCATGATCGCCGACCAGCTCAATGT
CAGCCGTGAGGCGCTGGTGGCCGTGGTCGACATCGGCGCCACCATGACCACCCTGTCGGTACTGCGCAACCAGCGCACGA
TCTACTCGCGCGAGCAGGTCTTCGGCGGCAAGCAGCTGACCGACGAGATCATGCGGCGCTTCGGCCTTTCCTACGAGGAA
GCCGGCCGCGCCAAGCGCAAGGGCGGCCTGCCCGAGTCCTACGAGACCGAGGCGCTGGAGCCGTTCAAGGAATCGCTGAT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTTTGCCGGCAGTGAATACAGCAAGGTCGACCAGGTCGTGCTGGCCGGTG
GCTGCGCCTCGATCGAAGGCCTTGGTCCGATGCTCGAAGAGCAGCTCGGCGTGCCCTGTGTCGTCGCCAATCCGCTGGCC
CGCATGTCGCTGTCGCCTCGGGTCCAGGCGCAGTCGCTGGCGCAGGACGCCCCCGCGTTGATGATTGCGGTGGGCCTCGC
CTTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.705

100

0.517
  comM Acinetobacter nosocomialis M2

51.42

100

0.514
  comM Acinetobacter baylyi ADP1

51.143

99.432

0.509
  pilM Legionella pneumophila strain ERS1305867

42.776

100

0.429