Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6K01_RS07855 Genome accession   NZ_CP069518
Coordinates   1630513..1631043 (+) Length   176 a.a.
NCBI ID   WP_000168327.1    Uniprot ID   -
Organism   Salmonella enterica strain FDAARGOS_1271     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1625513..1636043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K01_RS07830 (I6K01_07830) - 1625752..1626168 (+) 417 WP_000270392.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6K01_RS07835 (I6K01_07835) - 1626171..1626527 (+) 357 WP_000155665.1 MmcQ/YjbR family DNA-binding protein -
  I6K01_RS07840 (I6K01_07840) - 1626528..1626866 (-) 339 WP_000146601.1 hypothetical protein -
  I6K01_RS07845 (I6K01_07845) - 1626853..1627308 (-) 456 WP_000432195.1 hypothetical protein -
  I6K01_RS07850 (I6K01_07850) uvrA 1627440..1630265 (-) 2826 WP_000357725.1 excinuclease ABC subunit UvrA -
  I6K01_RS07855 (I6K01_07855) ssb 1630513..1631043 (+) 531 WP_000168327.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6K01_RS07860 (I6K01_07860) siiA 1632083..1632715 (+) 633 WP_000389240.1 SPI-4 type I secretion system auxiliary protein SiiA -
  I6K01_RS07865 (I6K01_07865) - 1632712..1634100 (+) 1389 WP_000875198.1 MotA/TolQ/ExbB proton channel family protein -
  I6K01_RS07870 (I6K01_07870) siiC 1634090..1635409 (+) 1320 WP_049794233.1 SPI-4 type I secretion system protein SiiC -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19104.17 Da        Isoelectric Point: 5.2456

>NTDB_id=535287 I6K01_RS07855 WP_000168327.1 1630513..1631043(+) (ssb) [Salmonella enterica strain FDAARGOS_1271]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPTGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=535287 I6K01_RS07855 WP_000168327.1 1630513..1631043(+) (ssb) [Salmonella enterica strain FDAARGOS_1271]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGTCAGGGCGGCGGCGCACCGACAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AACCGCAACAACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.429

100

0.739
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477