Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | SCV20265_RS28325 | Genome accession | NC_023149 |
| Coordinates | 6091755..6092378 (-) | Length | 207 a.a. |
| NCBI ID | WP_003116135.1 | Uniprot ID | A0A0H2ZIF6 |
| Organism | Pseudomonas aeruginosa SCV20265 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6086755..6097378
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SCV20265_RS28305 (SCV20265_5710) | aroB | 6087362..6088468 (-) | 1107 | WP_016253983.1 | 3-dehydroquinate synthase | - |
| SCV20265_RS28310 (SCV20265_5711) | aroK | 6088518..6089036 (-) | 519 | WP_003095833.1 | shikimate kinase AroK | - |
| SCV20265_RS28315 (SCV20265_5712) | pilQ | 6089048..6091180 (-) | 2133 | WP_003116137.1 | type 4a pilus secretin PilQ | Machinery gene |
| SCV20265_RS28320 (SCV20265_5713) | comL/pilP | 6091234..6091758 (-) | 525 | WP_003116136.1 | type 4a pilus biogenesis lipoprotein PilP | Machinery gene |
| SCV20265_RS28325 (SCV20265_5714) | pilO | 6091755..6092378 (-) | 624 | WP_003116135.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| SCV20265_RS28330 (SCV20265_5715) | pilN | 6092375..6092971 (-) | 597 | WP_003141783.1 | type 4a pilus biogenesis protein PilN | - |
| SCV20265_RS28335 (SCV20265_5716) | pilM | 6092971..6094035 (-) | 1065 | WP_003110888.1 | type IV pilus assembly protein PilM | Machinery gene |
| SCV20265_RS28340 (SCV20265_5717) | - | 6094220..6096691 (+) | 2472 | WP_024100117.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 207 a.a. Molecular weight: 22958.35 Da Isoelectric Point: 4.9107
>NTDB_id=53520 SCV20265_RS28325 WP_003116135.1 6091755..6092378(-) (pilO) [Pseudomonas aeruginosa SCV20265]
MSLASSLESLRKIDVNDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLRDLQTQLEQQAAQEESLKQQFATKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPASPDNTSKLRMSILAKTYRYNDKGLKK
MSLASSLESLRKIDVNDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLRDLQTQLEQQAAQEESLKQQFATKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVTQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPASPDNTSKLRMSILAKTYRYNDKGLKK
Nucleotide
Download Length: 624 bp
>NTDB_id=53520 SCV20265_RS28325 WP_003116135.1 6091755..6092378(-) (pilO) [Pseudomonas aeruginosa SCV20265]
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGACGTAAACGACCTCGATCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGCTACAACTTCCATCTCCGTGACT
TGCAAACACAGCTCGAACAGCAGGCTGCGCAAGAAGAATCGCTCAAGCAGCAATTTGCTACCAAAGCGTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAAGAGATGGAGGAGTCCTTCGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGTCTGGGCAGCGGCCTGGAGTTCGAGGAGATCAAGCTGCTCC
CTGAAGTCACTCAGCAGTTCTATATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACCTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTTACCCTGCATGACTTCGAGATCAAGCCGGCTTCGCCCGATAACACCTC
GAAGCTGCGCATGAGCATCCTGGCCAAGACCTACCGCTACAACGACAAGGGGCTGAAGAAATGA
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGACGTAAACGACCTCGATCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGCTACAACTTCCATCTCCGTGACT
TGCAAACACAGCTCGAACAGCAGGCTGCGCAAGAAGAATCGCTCAAGCAGCAATTTGCTACCAAAGCGTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAAGAGATGGAGGAGTCCTTCGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGTCTGGGCAGCGGCCTGGAGTTCGAGGAGATCAAGCTGCTCC
CTGAAGTCACTCAGCAGTTCTATATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACCTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTTACCCTGCATGACTTCGAGATCAAGCCGGCTTCGCCCGATAACACCTC
GAAGCTGCGCATGAGCATCCTGGCCAAGACCTACCGCTACAACGACAAGGGGCTGAAGAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Legionella pneumophila strain ERS1305867 |
45.596 |
93.237 |
0.425 |
| pilO | Acinetobacter baumannii D1279779 |
45.789 |
91.787 |
0.42 |
| comO/pilO | Acinetobacter baylyi ADP1 |
43.617 |
90.821 |
0.396 |