Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   SCV20265_RS28320 Genome accession   NC_023149
Coordinates   6091234..6091758 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa SCV20265     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6086234..6096758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCV20265_RS28305 (SCV20265_5710) aroB 6087362..6088468 (-) 1107 WP_016253983.1 3-dehydroquinate synthase -
  SCV20265_RS28310 (SCV20265_5711) aroK 6088518..6089036 (-) 519 WP_003095833.1 shikimate kinase AroK -
  SCV20265_RS28315 (SCV20265_5712) pilQ 6089048..6091180 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  SCV20265_RS28320 (SCV20265_5713) comL/pilP 6091234..6091758 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  SCV20265_RS28325 (SCV20265_5714) pilO 6091755..6092378 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  SCV20265_RS28330 (SCV20265_5715) pilN 6092375..6092971 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  SCV20265_RS28335 (SCV20265_5716) pilM 6092971..6094035 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  SCV20265_RS28340 (SCV20265_5717) - 6094220..6096691 (+) 2472 WP_024100117.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=53519 SCV20265_RS28320 WP_003116136.1 6091234..6091758(-) (comL/pilP) [Pseudomonas aeruginosa SCV20265]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=53519 SCV20265_RS28320 WP_003116136.1 6091234..6091758(-) (comL/pilP) [Pseudomonas aeruginosa SCV20265]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAATTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362

Multiple sequence alignment