Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6K02_RS04285 Genome accession   NZ_CP069482
Coordinates   906105..906650 (-) Length   181 a.a.
NCBI ID   WP_006763387.1    Uniprot ID   A0A892I5U2
Organism   Burkholderia dolosa strain FDAARGOS_1272     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 901105..911650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K02_RS04260 (I6K02_04260) phaP 901234..901815 (-) 582 WP_006763393.1 TIGR01841 family phasin -
  I6K02_RS04265 (I6K02_04265) - 902548..903171 (-) 624 WP_006763392.1 DNA-3-methyladenine glycosylase -
  I6K02_RS04270 (I6K02_04270) - 903955..904290 (+) 336 WP_006763390.1 ArsR/SmtB family transcription factor -
  I6K02_RS04275 (I6K02_04275) arsB 904335..905429 (+) 1095 WP_035973268.1 ACR3 family arsenite efflux transporter -
  I6K02_RS04280 (I6K02_04280) arsC 905426..905848 (+) 423 WP_006763388.1 arsenate reductase (glutaredoxin) -
  I6K02_RS04285 (I6K02_04285) ssb 906105..906650 (-) 546 WP_006763387.1 single-stranded DNA-binding protein Machinery gene
  I6K02_RS04290 (I6K02_04290) - 906752..907939 (-) 1188 WP_006763386.1 MFS transporter -
  I6K02_RS04295 (I6K02_04295) uvrA 908202..911087 (+) 2886 WP_006763385.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18703.49 Da        Isoelectric Point: 5.3476

>NTDB_id=534987 I6K02_RS04285 WP_006763387.1 906105..906650(-) (ssb) [Burkholderia dolosa strain FDAARGOS_1272]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGSGGSGGGDEGGYGGGYGGGGRGEQAERGGAARSAGGGAGGAARSGGA
QSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=534987 I6K02_RS04285 WP_006763387.1 906105..906650(-) (ssb) [Burkholderia dolosa strain FDAARGOS_1272]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGATGC
GGTTGCGAACATCCGTCTCGCGACGACCGACCGCTACAAGGACAAGGCGAGCGGCGAGTTCAAGGAAATGACCGAGTGGC
ATCGCGTCGCGTTCTTCGGCCGTCTGGCGGAAATCGTCAGCGAGTATCTGAAGAAGGGTTCGTCGGTGTACATCGAAGGC
CGGATCCGCACGCGCAAGTGGCAAGGCCAGGACGGTCAGGATCGCTATTCGACCGAAATCGTCGCCGACCAGATGCAGAT
GCTCGGCGGCCGCGGCGGTTCGGGCGGCAGTGGCGGCGGTGACGAGGGCGGTTATGGCGGCGGCTACGGTGGTGGCGGCC
GCGGCGAGCAGGCCGAACGCGGCGGCGCGGCGCGCAGTGCGGGCGGCGGTGCCGGCGGTGCGGCTCGCAGCGGCGGCGCG
CAGAGCCGTCCGAGCGCGCCGGCCGGCGGCGGCTTCGACGAGATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.746

100

0.541
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.492
  ssb Neisseria gonorrhoeae MS11

44.693

98.895

0.442
  ssb Neisseria meningitidis MC58

44.693

98.895

0.442