Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   LEL86_RS13195 Genome accession   NZ_CP084357
Coordinates   2895385..2896005 (-) Length   206 a.a.
NCBI ID   WP_032780914.1    Uniprot ID   -
Organism   Streptomyces sp. WA6-1-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2890385..2901005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEL86_RS13175 (LEL86_13175) - 2890952..2892181 (-) 1230 WP_225681185.1 DUF349 domain-containing protein -
  LEL86_RS13180 (LEL86_13180) - 2892404..2893195 (-) 792 WP_032780907.1 peptidylprolyl isomerase -
  LEL86_RS13185 (LEL86_13185) - 2893353..2894042 (+) 690 WP_032768143.1 MBL fold metallo-hydrolase -
  LEL86_RS13190 (LEL86_13190) hisS 2894060..2895322 (+) 1263 WP_150195823.1 histidine--tRNA ligase -
  LEL86_RS13195 (LEL86_13195) vraR 2895385..2896005 (-) 621 WP_032780914.1 response regulator Regulator
  LEL86_RS13200 (LEL86_13200) - 2896005..2897267 (-) 1263 WP_225681186.1 sensor histidine kinase -
  LEL86_RS13205 (LEL86_13205) - 2897225..2898046 (-) 822 WP_032780918.1 ABC transporter permease -
  LEL86_RS13210 (LEL86_13210) - 2898043..2898900 (-) 858 WP_225681187.1 ABC transporter ATP-binding protein -
  LEL86_RS13215 (LEL86_13215) - 2899037..2899675 (+) 639 WP_006123204.1 vitamin K epoxide reductase family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21922.42 Da        Isoelectric Point: 5.7852

>NTDB_id=534951 LEL86_RS13195 WP_032780914.1 2895385..2896005(-) (vraR) [Streptomyces sp. WA6-1-16]
MIRVLLADDHPVVREGLRGMLDAEADLDVVGEADSGPRAEALCAELLPDIVLMDLRMPGGGGVESIRRIRAAGLPCRVVV
LTTYESDGDILRAVEAGASGYLLKDLGRGELADAIRAAARGETVLAPTVATRLVDRLRGVPELPRLSERETQVLRLVAEG
CTNAEIGRKLFIGESTVKTHLLRIFGKLGVGDRTAAVTGAMRHGLL

Nucleotide


Download         Length: 621 bp        

>NTDB_id=534951 LEL86_RS13195 WP_032780914.1 2895385..2896005(-) (vraR) [Streptomyces sp. WA6-1-16]
ATGATCCGTGTCCTGCTGGCCGACGACCACCCCGTCGTACGGGAGGGGCTGCGCGGAATGCTGGACGCCGAGGCGGACCT
CGACGTGGTCGGCGAGGCCGACAGCGGCCCCCGTGCCGAGGCCCTGTGCGCCGAGCTGCTGCCGGACATCGTGCTGATGG
ACCTGCGGATGCCGGGCGGCGGGGGCGTCGAGTCGATCCGCCGGATACGGGCGGCGGGGCTGCCGTGCCGGGTCGTGGTG
CTGACCACGTACGAGAGCGACGGCGACATCCTGCGGGCGGTGGAGGCCGGGGCGTCCGGCTATCTGCTCAAGGACCTGGG
CCGGGGCGAGCTGGCGGACGCGATCCGGGCCGCGGCGCGGGGCGAGACGGTGCTCGCGCCGACGGTGGCGACCCGGCTGG
TGGACCGGCTGCGCGGGGTGCCGGAGCTGCCGCGGCTCTCGGAGCGGGAGACGCAGGTGCTGCGGCTGGTGGCGGAGGGG
TGCACCAACGCGGAGATCGGGCGGAAGCTGTTCATCGGGGAGTCGACGGTGAAGACCCATCTGCTGCGGATCTTCGGCAA
GCTGGGCGTCGGCGACCGTACGGCGGCGGTGACGGGGGCGATGCGCCACGGGCTGCTGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-198)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.262

100

0.413
  degU Bacillus subtilis subsp. subtilis str. 168

34.978

100

0.379
  letA Legionella pneumophila str. Paris

36.842

100

0.374
  letA Legionella pneumophila strain ERS1305867

36.842

100

0.374