Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6J79_RS18655 Genome accession   NZ_CP069459
Coordinates   3840699..3841235 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain FDAARGOS_1249     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3835699..3846235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J79_RS18635 (I6J79_18635) aphA 3835988..3836701 (+) 714 WP_001226928.1 acid phosphatase AphA -
  I6J79_RS18640 (I6J79_18640) yjbQ 3836812..3837228 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6J79_RS18645 (I6J79_18645) yjbR 3837232..3837588 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  I6J79_RS18650 (I6J79_18650) uvrA 3837623..3840445 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  I6J79_RS18655 (I6J79_18655) ssb 3840699..3841235 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6J79_RS18660 (I6J79_18660) yjcB 3841334..3841615 (-) 282 WP_001295689.1 YjcB family protein -
  I6J79_RS18665 (I6J79_18665) pdeC 3842045..3843631 (+) 1587 WP_085447927.1 c-di-GMP phosphodiesterase PdeC -
  I6J79_RS18670 (I6J79_18670) soxS 3843634..3843957 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  I6J79_RS18675 (I6J79_18675) soxR 3844043..3844507 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=534875 I6J79_RS18655 WP_000168305.1 3840699..3841235(+) (ssb) [Escherichia coli strain FDAARGOS_1249]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=534875 I6J79_RS18655 WP_000168305.1 3840699..3841235(+) (ssb) [Escherichia coli strain FDAARGOS_1249]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489