Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6J91_RS13930 Genome accession   NZ_CP069441
Coordinates   2960068..2960604 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain FDAARGOS_1261     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2955068..2965604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J91_RS13910 (I6J91_13910) aphA 2955356..2956069 (+) 714 WP_001226933.1 acid phosphatase AphA -
  I6J91_RS13915 (I6J91_13915) yjbQ 2956180..2956596 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6J91_RS13920 (I6J91_13920) yjbR 2956600..2956956 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  I6J91_RS13925 (I6J91_13925) uvrA 2956991..2959813 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  I6J91_RS13930 (I6J91_13930) ssb 2960068..2960604 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6J91_RS13935 (I6J91_13935) yjcB 2960703..2960984 (-) 282 WP_001298294.1 YjcB family protein -
  I6J91_RS13940 (I6J91_13940) pdeC 2961413..2962966 (+) 1554 WP_001468319.1 c-di-GMP phosphodiesterase PdeC -
  I6J91_RS13945 (I6J91_13945) soxS 2963002..2963325 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  I6J91_RS13950 (I6J91_13950) soxR 2963411..2963875 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=534722 I6J91_RS13930 WP_000168305.1 2960068..2960604(+) (ssb) [Escherichia coli strain FDAARGOS_1261]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=534722 I6J91_RS13930 WP_000168305.1 2960068..2960604(+) (ssb) [Escherichia coli strain FDAARGOS_1261]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489