Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   I6J32_RS05420 Genome accession   NZ_CP069437
Coordinates   1087839..1088891 (-) Length   350 a.a.
NCBI ID   WP_204156439.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1082839..1093891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J32_RS05395 (I6J32_05400) - 1082882..1083418 (-) 537 WP_062334134.1 shikimate kinase -
  I6J32_RS05400 (I6J32_05405) pilQ 1083527..1085866 (-) 2340 WP_204156435.1 type IV pilus secretin family protein -
  I6J32_RS05405 (I6J32_05410) - 1085884..1086417 (-) 534 WP_204156436.1 pilus assembly protein PilP -
  I6J32_RS05410 (I6J32_05415) - 1086404..1087165 (-) 762 WP_204156437.1 type 4a pilus biogenesis protein PilO -
  I6J32_RS05415 (I6J32_05420) - 1087168..1087839 (-) 672 WP_204156438.1 PilN domain-containing protein -
  I6J32_RS05420 (I6J32_05425) pilM 1087839..1088891 (-) 1053 WP_204156439.1 pilus assembly protein PilM Machinery gene
  I6J32_RS05425 (I6J32_05430) - 1089093..1091819 (+) 2727 WP_204156440.1 penicillin-binding protein 1A -
  I6J32_RS05430 (I6J32_05435) - 1091949..1092467 (-) 519 WP_204156441.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38281.56 Da        Isoelectric Point: 4.5743

>NTDB_id=534659 I6J32_RS05420 WP_204156439.1 1087839..1088891(-) (pilM) [Moraxella osloensis strain FDAARGOS_1202]
MRLFTKNNKQVVGVDITTTAIKMVEITRQQGLFHLRNYGIEPLPRGAVVDKNIVDIDAVSDALARLSRGSGFSSKHIATA
VSGSSVISKVIEMEADLTELERESRIRLDADQYIPYPLSEVNLDFEVIGPSATPDMCKVLLVASRTENVDQRVDAGALAG
LDTKIVDVEAYAVERAFQLMVDSLPGQPQHVALIDIGHSQTTLYIAKDGEFVYSREQLFGGAQLTESIQSRYGLTFEEAM
INKRTLSLPDDYYTDVLMPFLDAIVQQITRSLQFYFSSSQNSQVDYILLGGGSASIAGLASMVEQKLGTRTGIANAFSNM
TINNHINTELLIMDAPSLIAACGLALRSFD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=534659 I6J32_RS05420 WP_204156439.1 1087839..1088891(-) (pilM) [Moraxella osloensis strain FDAARGOS_1202]
GTGAGGTTATTTACAAAAAACAACAAGCAAGTCGTTGGGGTAGATATCACCACCACTGCGATAAAAATGGTTGAAATAAC
ACGGCAGCAAGGTCTATTTCATTTAAGAAATTATGGCATTGAACCGTTACCCCGCGGTGCAGTTGTGGATAAAAATATTG
TAGATATTGACGCGGTCAGTGACGCCCTCGCAAGATTATCCCGTGGTAGCGGTTTTTCTAGTAAACATATTGCGACAGCC
GTATCTGGGTCTTCGGTTATCAGTAAAGTTATCGAAATGGAAGCGGATCTCACAGAGCTTGAAAGAGAATCTCGTATCCG
TCTGGATGCTGACCAATATATTCCCTATCCTTTATCAGAAGTGAATTTAGATTTTGAAGTGATAGGTCCTTCAGCCACGC
CTGATATGTGTAAGGTATTGTTGGTTGCCTCTCGCACTGAAAACGTCGACCAGCGTGTCGATGCGGGCGCTTTAGCGGGA
CTGGATACTAAAATTGTGGATGTAGAGGCTTACGCAGTTGAACGCGCTTTTCAATTGATGGTCGATAGCTTGCCAGGTCA
ACCTCAGCATGTAGCACTCATTGATATCGGGCATAGCCAAACCACGCTTTATATTGCAAAAGACGGGGAGTTTGTATACA
GCCGGGAACAGCTTTTTGGTGGCGCCCAGTTAACTGAAAGTATTCAAAGCCGTTATGGTTTGACGTTCGAGGAGGCGATG
ATTAATAAGCGCACCTTGTCATTGCCAGATGATTACTATACGGATGTATTAATGCCATTTTTAGATGCCATTGTGCAGCA
AATCACCCGCTCGCTGCAGTTTTATTTTTCATCAAGCCAAAATAGCCAAGTAGACTATATTTTGTTGGGTGGGGGCAGTG
CCAGCATTGCGGGTCTAGCAAGCATGGTTGAACAAAAACTTGGTACCCGCACAGGTATTGCCAATGCATTTTCAAATATG
ACGATTAATAACCATATCAACACTGAATTACTGATTATGGACGCGCCAAGCTTAATAGCAGCTTGTGGCTTGGCGTTACG
GAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.852

100

0.52
  comM Acinetobacter nosocomialis M2

50.997

100

0.511
  comM Acinetobacter baylyi ADP1

48.148

100

0.483
  pilM Legionella pneumophila strain ERS1305867

43.059

100

0.434