Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   JQM34_RS05530 Genome accession   NZ_CP069427
Coordinates   1187569..1189548 (-) Length   659 a.a.
NCBI ID   WP_200370491.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182569..1194548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS05510 (JQM34_0001124) amiF 1183064..1183993 (-) 930 WP_200370488.1 ATP-binding cassette domain-containing protein Regulator
  JQM34_RS05515 (JQM34_0001125) amiE 1184004..1185071 (-) 1068 WP_000159799.1 ABC transporter ATP-binding protein Regulator
  JQM34_RS05520 (JQM34_0001126) amiD 1185080..1186006 (-) 927 WP_000103935.1 oligopeptide ABC transporter permease OppC Regulator
  JQM34_RS05525 (JQM34_0001127) amiC 1186006..1187502 (-) 1497 WP_200370490.1 ABC transporter permease Regulator
  JQM34_RS05530 (JQM34_0001128) amiA 1187569..1189548 (-) 1980 WP_200370491.1 peptide ABC transporter substrate-binding protein Regulator
  JQM34_RS05540 (JQM34_0001130) - 1190051..1191382 (-) 1332 WP_200370492.1 hemolysin family protein -
  JQM34_RS05545 (JQM34_0001131) - 1191518..1192341 (-) 824 Protein_1103 DNA/RNA non-specific endonuclease -
  JQM34_RS05550 (JQM34_0001133) - 1192382..1192576 (-) 195 WP_000739700.1 DNA-directed RNA polymerase subunit beta -
  JQM34_RS05555 (JQM34_0001134) murA 1192563..1193846 (-) 1284 WP_180833558.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JQM34_RS05560 - 1193870..1194100 (-) 231 WP_002892633.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72736.81 Da        Isoelectric Point: 4.7627

>NTDB_id=534528 JQM34_RS05530 WP_200370491.1 1187569..1189548(-) (amiA) [Streptococcus oralis strain SF100]
MKKSRVFVAAGVALLAAGVLAACGSSKSSDSTAPKNYGYVYTADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADNKSAAKYLAEDSVKGLADYIAGNNKDFASV
GVKAVDDYTLEYTLNKPEPYWNSKLAYSIFWPLNEEFEKSKGSDFGKATDPTSLLYNGPFLLRGLTAKSSIEFVKNENYW
DKDNVHLDKVTLAYYDGSDQESIERNFTSGAYSYARLFPTSSNYSKVEETYKDNIYYTPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPLAVRNLFVKPDFVSAGEKTFGDLVTEKMAAYGDEWKN
VSFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTSKNYIARIQSFKQSVETVLGEENVVIDIQQITTDE
LQNITYYAASAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAGKETS
DLNVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPIISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=534528 JQM34_RS05530 WP_200370491.1 1187569..1189548(-) (amiA) [Streptococcus oralis strain SF100]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGTGTTGCTTTATTAGCAGCAGGAGTACTAGCTGCTTGCGGTTCTTCAAA
ATCATCTGATTCAACAGCGCCAAAAAATTATGGCTATGTTTATACAGCTGACCCAGAAACGTTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGGTCGCCACTTCAAATGGTATCGACGGTCTTTTCACAAACGACAAGTATGGGAATTTAGTTCCT
GCAGTTGCAGAAGACTGGTCCGTTTCAAAAGATGGTTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATGGATGAC
ATCTGATGGCGAAGAGTATGCTGAAGTAACAGCCAAAGACTTTGTAAATGGTTTGAAACACGCAGCTGACAATAAATCAG
CAGCTAAGTATCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATATAGCTGGAAACAATAAAGATTTTGCTTCAGTC
GGTGTAAAAGCAGTTGATGATTATACCCTTGAATACACTTTGAACAAACCAGAACCATACTGGAACTCTAAGCTGGCCTA
CTCAATCTTCTGGCCATTGAACGAAGAATTTGAAAAATCAAAAGGATCTGATTTTGGTAAAGCGACTGACCCTACATCAT
TGCTTTACAATGGACCATTCTTGCTGAGAGGTTTGACTGCTAAGTCATCTATCGAATTTGTGAAGAATGAAAACTATTGG
GACAAAGACAATGTTCATCTTGATAAAGTAACACTTGCTTACTATGATGGTTCTGATCAAGAATCAATTGAACGTAACTT
TACAAGTGGGGCTTATAGCTATGCCCGTCTCTTCCCAACAAGTTCAAACTACTCTAAGGTAGAAGAAACATACAAAGACA
ATATCTACTACACTCCATCAGGTCCAGGTATTGGTGGTTTGGGTGTAAATATTGACCGTCAAGGTTACAAATACACTTCT
AAGACAACTGATGAAGAGAAGACTTCTACTAAGAAAGCCCTTCTTAACAAGGACTTCCGTCAGGCTTTGAACTTTGCCTT
TGACCGTACTTCTTACTCAGCACAAATTAATGGTAAGGAAGGCGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCAG
ACTTTGTCTCTGCAGGCGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCTGCTTACGGTGATGAATGGAAGAAT
GTAAGCTTTGCGGATGGTCAAGATGGACTTTTCAACGCCGATAAAGCCAAAGCAGAATTTGCGAAAGCTAAAACAGCATT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATATCCCAGTAGACCAAACATCTAAAAACTATATCGCACGTATTC
AATCCTTCAAACAATCCGTTGAGACAGTACTTGGAGAAGAAAACGTAGTCATCGATATCCAACAAATCACTACAGATGAA
CTACAGAATATTACATACTATGCAGCAAGCGCTGCGGCAGAAGATTGGGATCTCTCAGGTGCTGTTGGATGGAACCCAGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAGACAACGAATGCTGAACAAACTAAAACATACATGGGTTATGAAG
GTGCAGATAATGCTGCAGCAGCTCAAGTTGGTTTGAAAGAATACGATAAGTTAGTTGATGAAGCAGGAAAAGAAACAAGT
GACTTGAATGTTCGTTATGAAAAATACGCGGCTGCCCAAGCTTGGTTGACAGATAGTTCACTCTTCTTGCCAGCTATGTC
ATCAAGTGGTGCTGCACCAATCATTTCTCGTGTTGTGCCATTCACAGCATCATACAGCCAATCTGGAGATAAGGGCTCAG
ACGTATACTTCAAGTATATTCAGTTACAAGATAAGGTTGTAACAAAAGCTGATTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.83

100

0.678
  amiA3 Streptococcus thermophilus LMG 18311

67.727

100

0.678
  amiA3 Streptococcus thermophilus LMD-9

67.576

100

0.677