Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   JQM34_RS05510 Genome accession   NZ_CP069427
Coordinates   1183064..1183993 (-) Length   309 a.a.
NCBI ID   WP_200370488.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1178064..1188993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM34_RS05490 (JQM34_0001119) - 1178303..1178866 (-) 564 WP_200370477.1 ECF transporter S component -
  JQM34_RS05495 (JQM34_0001121) - 1179279..1179782 (-) 504 WP_000181363.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  JQM34_RS05500 (JQM34_0001122) trkA 1180183..1181532 (+) 1350 WP_200370479.1 Trk system potassium transporter TrkA -
  JQM34_RS05505 (JQM34_0001123) - 1181536..1182975 (+) 1440 WP_200370481.1 TrkH family potassium uptake protein -
  JQM34_RS05510 (JQM34_0001124) amiF 1183064..1183993 (-) 930 WP_200370488.1 ATP-binding cassette domain-containing protein Regulator
  JQM34_RS05515 (JQM34_0001125) amiE 1184004..1185071 (-) 1068 WP_000159799.1 ABC transporter ATP-binding protein Regulator
  JQM34_RS05520 (JQM34_0001126) amiD 1185080..1186006 (-) 927 WP_000103935.1 oligopeptide ABC transporter permease OppC Regulator
  JQM34_RS05525 (JQM34_0001127) amiC 1186006..1187502 (-) 1497 WP_200370490.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35095.29 Da        Isoelectric Point: 7.0425

>NTDB_id=534524 JQM34_RS05510 WP_200370488.1 1183064..1183993(-) (amiF) [Streptococcus oralis strain SF100]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFRDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELARYKKALKE

Nucleotide


Download         Length: 930 bp        

>NTDB_id=534524 JQM34_RS05510 WP_200370488.1 1183064..1183993(-) (amiF) [Streptococcus oralis strain SF100]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTTGTTGGTGAGTCTGGTAGTGGGAAAACAACCATTGGTCGTG
CCATTATTGGTCTAAATAATACCAGTAAAGGTGAAATCATCTTTGATGGTCATAAAATTAATGGGAAAAAATCTCATAAG
GAATCATCAGATTTGATCCGTCGCATCCAGATGATTTTCCAGGACCCTGCAGCTAGCTTGAATGAGCGTGCAACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTACCACTTGTTCAGAGACGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGGCTTTTGAAAGAACACTTGACCCGTTACCCACACGAGTTTTCTGGTGGTCAACGTCAGCGTATCGGG
ATTGCCCGTGCTCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATTTCAGCCTTAGACGTATCTGTTCGCGC
GCAAGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACTTATCTCTTCATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCGGTTATCTATAAGGGAGTTATCGTCGAGGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATACACTCAAGCACTTCTATCTGCTGTACCAATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGACAAGCCGTCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCAGAACTTGCTCGTTACAAGAAAGCTCTTAAAGAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.902

98.706

0.848
  amiF Streptococcus thermophilus LMG 18311

84.918

98.706

0.838
  amiF Streptococcus thermophilus LMD-9

84.59

98.706

0.835