Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JR311_RS15450 Genome accession   NZ_CP069391
Coordinates   3160415..3161059 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain Sam8H1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3155415..3166059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS15415 (JR311_15415) - 3156600..3157031 (+) 432 WP_165409406.1 Na(+)/H(+) antiporter subunit B -
  JR311_RS15420 (JR311_15420) - 3157031..3157372 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  JR311_RS15425 (JR311_15425) - 3157365..3158846 (+) 1482 WP_204529905.1 Na+/H+ antiporter subunit D -
  JR311_RS15430 (JR311_15430) - 3158852..3159328 (+) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  JR311_RS15435 (JR311_15435) - 3159328..3159612 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  JR311_RS15440 (JR311_15440) mnhG 3159596..3159970 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  JR311_RS15445 (JR311_15445) - 3160010..3160393 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  JR311_RS15450 (JR311_15450) comA 3160415..3161059 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  JR311_RS15455 (JR311_15455) comP 3161140..3163431 (-) 2292 WP_204529906.1 histidine kinase Regulator
  JR311_RS15460 (JR311_15460) comX 3163443..3163607 (-) 165 WP_007613432.1 competence pheromone ComX -
  JR311_RS15465 (JR311_15465) - 3163607..3164518 (-) 912 WP_204530632.1 polyprenyl synthetase family protein -
  JR311_RS15470 (JR311_15470) degQ 3164670..3164810 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  JR311_RS15475 (JR311_15475) - 3165275..3165616 (+) 342 WP_156735720.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=534397 JR311_RS15450 WP_003152052.1 3160415..3161059(-) (comA) [Bacillus velezensis strain Sam8H1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=534397 JR311_RS15450 WP_003152052.1 3160415..3161059(-) (comA) [Bacillus velezensis strain Sam8H1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCAGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCATGTGCTGAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCTGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864