Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JO965_RS21630 Genome accession   NZ_CP069354
Coordinates   4609626..4610123 (+) Length   165 a.a.
NCBI ID   WP_203441045.1    Uniprot ID   A0A974T1X9
Organism   Microvirga sp. VF16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4604626..4615123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JO965_RS21600 (JO965_21595) - 4604639..4605640 (-) 1002 WP_203441039.1 metallophosphoesterase -
  JO965_RS21605 (JO965_21600) - 4605637..4607472 (-) 1836 WP_203441040.1 AAA family ATPase -
  JO965_RS21610 (JO965_21605) - 4607469..4607765 (-) 297 WP_203441041.1 hypothetical protein -
  JO965_RS21615 (JO965_21610) - 4608056..4608658 (+) 603 WP_203441042.1 hypothetical protein -
  JO965_RS21620 (JO965_21615) - 4608664..4609077 (+) 414 WP_203441043.1 hypothetical protein -
  JO965_RS21625 (JO965_21620) - 4609112..4609387 (+) 276 WP_203441044.1 hypothetical protein -
  JO965_RS21630 (JO965_21625) ssb 4609626..4610123 (+) 498 WP_203441045.1 single-stranded DNA-binding protein Machinery gene
  JO965_RS21635 (JO965_21630) - 4610193..4611107 (-) 915 WP_203441046.1 hypothetical protein -
  JO965_RS21655 (JO965_21650) - 4614748..4615026 (+) 279 WP_203439404.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18502.47 Da        Isoelectric Point: 5.8652

>NTDB_id=534171 JO965_RS21630 WP_203441045.1 4609626..4610123(+) (ssb) [Microvirga sp. VF16]
MAGSVNKVILVGNLGRDPEVRRLSNGEPVVNLRLATSETWKDKGTGERKEKTEWHSVVIFNENLARVAEQYLKKGSKVYV
EGQLQTRKWTDQSGQEKYTTEVVLQRFRGELTILDSRGGGASEYSDEEPGQIRSGGDFGRSSPMERRPEPAGSSRHSDFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=534171 JO965_RS21630 WP_203441045.1 4609626..4610123(+) (ssb) [Microvirga sp. VF16]
ATGGCTGGATCTGTGAACAAGGTGATTTTGGTGGGCAATCTGGGGCGGGACCCGGAGGTGCGGCGTCTGTCGAACGGGGA
GCCGGTGGTGAATCTGCGGCTTGCCACGTCGGAGACGTGGAAGGACAAGGGCACGGGCGAGCGCAAGGAGAAGACCGAGT
GGCACTCGGTGGTGATCTTCAACGAGAACCTGGCGCGGGTGGCGGAGCAGTATCTGAAGAAGGGCTCGAAGGTGTATGTT
GAGGGCCAGCTGCAGACGCGCAAGTGGACCGACCAGAGCGGCCAGGAGAAGTACACCACCGAGGTGGTGCTGCAGCGGTT
CCGGGGTGAGCTGACGATCCTGGACAGCCGCGGCGGCGGCGCCTCGGAGTATAGTGACGAGGAGCCCGGCCAGATCAGAA
GCGGCGGCGATTTCGGACGCTCGTCCCCCATGGAACGCCGACCCGAGCCGGCCGGGAGTTCCCGGCACAGCGATTTCGAT
GATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.809

100

0.533
  ssb Vibrio cholerae strain A1552

50.867

100

0.533
  ssb Neisseria meningitidis MC58

42.222

100

0.461
  ssb Neisseria gonorrhoeae MS11

42.222

100

0.461