Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | MASE_RS00905 | Genome accession | NC_018632 |
| Coordinates | 201555..202139 (+) | Length | 194 a.a. |
| NCBI ID | WP_014947881.1 | Uniprot ID | A0AB32ZTF8 |
| Organism | Alteromonas macleodii ATCC 27126 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 196555..207139
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MASE_RS00890 (MASE_00895) | - | 197180..198235 (+) | 1056 | WP_014947878.1 | UDP-glucose--hexose-1-phosphate uridylyltransferase | - |
| MASE_RS00895 (MASE_00900) | galK | 198228..199367 (+) | 1140 | WP_014947879.1 | galactokinase | - |
| MASE_RS00900 (MASE_00905) | - | 199725..201287 (+) | 1563 | WP_014947880.1 | sodium/sugar symporter | - |
| MASE_RS00905 (MASE_00910) | ssb | 201555..202139 (+) | 585 | WP_014947881.1 | single-stranded DNA-binding protein | Machinery gene |
| MASE_RS00910 (MASE_00915) | - | 202347..203300 (+) | 954 | WP_014947882.1 | hypothetical protein | - |
| MASE_RS00915 (MASE_00920) | - | 203441..204766 (+) | 1326 | WP_014947883.1 | alpha/beta hydrolase family protein | - |
| MASE_RS00920 (MASE_00925) | - | 204845..206974 (-) | 2130 | WP_014947884.1 | alpha-galactosidase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21128.03 Da Isoelectric Point: 4.9658
>NTDB_id=53417 MASE_RS00905 WP_014947881.1 201555..202139(+) (ssb) [Alteromonas macleodii ATCC 27126]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF
Nucleotide
Download Length: 585 bp
>NTDB_id=53417 MASE_RS00905 WP_014947881.1 201555..202139(+) (ssb) [Alteromonas macleodii ATCC 27126]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAGACGCGTAAGTGGCAAGATCAACAAGGCCAAGATAAATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGAAGGCGGTGGCGGTAACGGTGGTTACCAACGTCCTCAGAACAACCAAGGTGGTTACA
ACCAGGCGCCAGCACAAGGCGGTTATAACCAAGCGCCACAGCAAGGTGGTGGCCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGCGGCTACAATCAAGCGCCTCAAGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTTTAA
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAGACGCGTAAGTGGCAAGATCAACAAGGCCAAGATAAATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGAAGGCGGTGGCGGTAACGGTGGTTACCAACGTCCTCAGAACAACCAAGGTGGTTACA
ACCAGGCGCCAGCACAAGGCGGTTATAACCAAGCGCCACAGCAAGGTGGTGGCCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGCGGCTACAATCAAGCGCCTCAAGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56 |
100 |
0.577 |
| ssb | Vibrio cholerae strain A1552 |
54.5 |
100 |
0.562 |
| ssb | Neisseria meningitidis MC58 |
46.354 |
98.969 |
0.459 |
| ssb | Neisseria gonorrhoeae MS11 |
46.354 |
98.969 |
0.459 |