Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JO965_RS16115 Genome accession   NZ_CP069354
Coordinates   3463388..3463921 (-) Length   177 a.a.
NCBI ID   WP_203439872.1    Uniprot ID   A0A974T032
Organism   Microvirga sp. VF16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3458388..3468921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JO965_RS16100 (JO965_16095) - 3460411..3460584 (-) 174 WP_203439869.1 hypothetical protein -
  JO965_RS16105 (JO965_16100) - 3460645..3460872 (-) 228 WP_203439870.1 hypothetical protein -
  JO965_RS16110 (JO965_16105) - 3461214..3463136 (-) 1923 WP_203439871.1 M10 family metallopeptidase C-terminal domain-containing protein -
  JO965_RS16115 (JO965_16110) ssb 3463388..3463921 (-) 534 WP_203439872.1 single-stranded DNA-binding protein Machinery gene
  JO965_RS16120 (JO965_16115) - 3464049..3465938 (-) 1890 WP_203439873.1 M10 family metallopeptidase C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19267.16 Da        Isoelectric Point: 6.0050

>NTDB_id=534169 JO965_RS16115 WP_203439872.1 3463388..3463921(-) (ssb) [Microvirga sp. VF16]
MAGSVNKVILVGNLGRDPEVRRLSNGEPVVNLRLATSETWKDKGTGERKEKTEWHSVVIFNENLARVAEQYLKKGSKVYV
EGQLQTRKWTDQSGQEKYTTEVVLQRFRGELTILDSRGGGASEYSDEEPGQIRSGGDFGGRSPSQDRRPAPSFGGGGSGG
SGGGGSRYNDLDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=534169 JO965_RS16115 WP_203439872.1 3463388..3463921(-) (ssb) [Microvirga sp. VF16]
ATGGCTGGATCTGTGAACAAGGTGATTTTGGTGGGCAATCTGGGGCGGGACCCGGAGGTGCGGCGTCTGTCGAACGGGGA
GCCGGTGGTGAATCTGCGGCTTGCCACGTCGGAGACGTGGAAGGACAAGGGCACGGGCGAGCGCAAGGAGAAGACCGAGT
GGCACTCGGTGGTGATCTTCAACGAGAACCTGGCGCGGGTGGCGGAGCAGTATCTGAAGAAGGGCTCGAAGGTGTATGTT
GAGGGCCAGCTGCAGACGCGCAAGTGGACCGACCAGAGCGGCCAGGAGAAGTACACCACCGAGGTGGTGCTGCAGCGGTT
CCGGGGTGAGCTGACGATCCTGGACAGCCGCGGCGGCGGCGCCTCGGAGTATAGCGACGAGGAGCCCGGCCAGATCAGAA
GCGGCGGCGATTTCGGTGGGCGCTCTCCCTCACAGGATCGCCGGCCGGCGCCGTCCTTCGGCGGAGGCGGCAGTGGCGGC
AGCGGGGGCGGCGGCTCCCGCTACAACGATCTCGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.04

100

0.525
  ssb Vibrio cholerae strain A1552

49.444

100

0.503
  ssb Neisseria gonorrhoeae MS11

40.984

100

0.424
  ssb Neisseria meningitidis MC58

39.153

100

0.418