Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JN757_RS25110 Genome accession   NZ_CP069352
Coordinates   5729085..5729606 (-) Length   173 a.a.
NCBI ID   WP_042610650.1    Uniprot ID   A0A1H1Q0A8
Organism   Pseudomonas granadensis isolate CT364     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5724085..5734606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN757_RS25080 (JN757_25070) - 5724441..5725022 (+) 582 WP_203419683.1 YjfI family protein -
  JN757_RS25085 (JN757_25075) - 5725040..5725738 (+) 699 WP_203419684.1 PspA/IM30 family protein -
  JN757_RS25090 (JN757_25080) - 5725951..5726601 (+) 651 WP_203419685.1 DUF2491 family protein -
  JN757_RS25095 (JN757_25085) - 5726616..5727041 (+) 426 WP_203419686.1 DUF350 domain-containing protein -
  JN757_RS25100 (JN757_25090) - 5727059..5727754 (+) 696 WP_203419687.1 DUF1190 domain-containing protein -
  JN757_RS25105 (JN757_25095) - 5727757..5728914 (+) 1158 WP_203419688.1 glutathionylspermidine synthase family protein -
  JN757_RS25110 (JN757_25100) ssb 5729085..5729606 (-) 522 WP_042610650.1 single-stranded DNA-binding protein Machinery gene
  JN757_RS25115 (JN757_25105) - 5729622..5731013 (-) 1392 WP_090286764.1 MFS transporter -
  JN757_RS25120 (JN757_25110) uvrA 5731205..5734039 (+) 2835 WP_203419689.1 excinuclease ABC subunit UvrA -
  JN757_RS25125 (JN757_25115) bfr 5734104..5734571 (-) 468 WP_203419690.1 bacterioferritin -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19212.36 Da        Isoelectric Point: 5.9314

>NTDB_id=534146 JN757_RS25110 WP_042610650.1 5729085..5729606(-) (ssb) [Pseudomonas granadensis isolate CT364]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAPPAPQQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=534146 JN757_RS25110 WP_042610650.1 5729085..5729606(-) (ssb) [Pseudomonas granadensis isolate CT364]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGCGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGTGAATGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTCGGCGGCCGTCCACAACAGGGCGACCAGCAAGGCGGCGGCAACAACTACCAGCAGCAGGCGCCACGCC
AGCAGGCTCCGCGCCCGCAGCAGTCGGCACCGCAGCAGCGTTCGGCGCCGCCAGCTCCACAGCAGGCCGCACCGCAGCCG
GCTCCGGATTTCGACAGTTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1Q0A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.923

100

0.613
  ssb Neisseria meningitidis MC58

48.066

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.503
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.497