Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JN757_RS24055 Genome accession   NZ_CP069352
Coordinates   5498293..5499639 (+) Length   448 a.a.
NCBI ID   WP_203419542.1    Uniprot ID   -
Organism   Pseudomonas granadensis isolate CT364     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5493293..5504639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN757_RS24030 (JN757_24020) pgeF 5493499..5494221 (-) 723 WP_203419538.1 peptidoglycan editing factor PgeF -
  JN757_RS24035 (JN757_24025) rluD 5494218..5495180 (-) 963 WP_203419539.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JN757_RS24040 (JN757_24030) - 5495332..5496348 (+) 1017 WP_090286399.1 outer membrane protein assembly factor BamD -
  JN757_RS24045 (JN757_24035) - 5496475..5496717 (+) 243 WP_203419540.1 PP0621 family protein -
  JN757_RS24050 (JN757_24040) pilS 5496707..5498296 (+) 1590 WP_203419541.1 ATP-binding protein Regulator
  JN757_RS24055 (JN757_24045) pilR 5498293..5499639 (+) 1347 WP_203419542.1 sigma-54 dependent transcriptional regulator Regulator
  JN757_RS24060 (JN757_24050) thiO 5499772..5500872 (-) 1101 WP_203419543.1 glycine oxidase ThiO -
  JN757_RS24065 (JN757_24055) - 5500930..5501331 (-) 402 WP_203419544.1 type IV pilin protein -
  JN757_RS24070 (JN757_24060) - 5501347..5504436 (-) 3090 WP_203419545.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50111.42 Da        Isoelectric Point: 6.8295

>NTDB_id=534144 JN757_RS24055 WP_203419542.1 5498293..5499639(+) (pilR) [Pseudomonas granadensis isolate CT364]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLAEAQTLLQREAFDLCLTDMRLPDGTGLELVQHIQQRYPQVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSSALRMPAAGGHCTPIDRHLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHMLKRLAKDTGQPAARLHPKALEALKNYRFPGNVRELENVLERAHTLCENRTIEASDLRLSEGNSAADGAIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=534144 JN757_RS24055 WP_203419542.1 5498293..5499639(+) (pilR) [Pseudomonas granadensis isolate CT364]
TTGAATACAAGCCCACGGCAAAAAATCCTCATTGTTGACGACGAACCGGACATCCGCGAACTCCTCGAAATCACGCTAGG
CCGGATGAAGCTCGACACTTACAGCGCACGCAATCTGGCCGAAGCGCAAACGCTGTTGCAGCGCGAGGCGTTCGATCTGT
GCCTGACCGACATGCGTCTGCCCGACGGCACGGGGCTGGAGCTGGTGCAGCACATCCAGCAACGTTATCCACAAGTGCCA
GTGGCGATGATCACCGCGTATGGCAGCCTGGAAACCGCAATCAATGCGCTGAAGGCCGGGGCGTTCGACTTTCTGACCAA
ACCGGTTGACCTCACTCGCCTGCGCGAGCTGGTCAGCAGTGCCTTGCGCATGCCGGCGGCCGGTGGCCATTGCACACCGA
TCGATCGGCATTTGCTCGGCGATTCACCGCCGATGCGCAACTTGCGCAAGCAGATCGACAAACTCGCCCGTAGTCAGGCG
CCGGTGTACATCAGCGGTGAATCAGGCAGCGGCAAGGAGTTGGTTGCCCGGCTGATCCATGAACAAGGGCCGCGCGCCAG
CCAGCCGTTCGTGCCGGTCAACTGCGGGGCGATTCCGTCGGAGTTGATGGAAAGCGAATTTTTCGGCCATCGCAAAGGCA
GTTTCACTGGCGCGGTCGAGGACAAGCCAGGGCTGTTTCAAGCGGCCCATGGCGGCACATTGTTTCTTGATGAAGTGGCG
GATTTGCCATTGTCGATGCAGGTCAAGCTGCTGCGAGCCATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGTCAGCAGGA
AACCGTGGTCGACGTGCGGATTCTTTGCGCCACGCACAAGGACCTCGATGCCGAGGTCGCCGCCGAGCGCTTTCGTCAGG
ATTTGTACTACCGCTTGAACGTAATCGAGCTGCGCGTGCCGTCTCTGCGCGAGCGGCGCGATGACATCGAAGTGCTCGCG
GCGCATATGCTCAAGCGCTTGGCCAAAGATACCGGCCAGCCAGCGGCGCGTCTGCACCCGAAGGCGCTCGAAGCACTGAA
GAACTACCGCTTCCCCGGCAATGTGCGCGAACTGGAAAACGTCCTCGAGCGAGCCCATACCCTGTGCGAGAACCGTACGA
TCGAGGCCAGTGATCTGCGCCTCAGCGAGGGTAACAGTGCGGCAGATGGCGCGATTGCCGATCTGACGCAAATCGACAAT
CTCGAAGATTATCTGGAGAACGTCGAGCGCAAGCTGATCCTGCAGGCACTGGAAGAGACGCGCTGGAACCGTACGGCGGC
AGCGCAGCGCCTGAGTCTTTCGTTTCGGTCGATGCGTTACCGGCTGAAGAAACTCGGGCTGGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.684

98.884

0.788
  pilR Acinetobacter baumannii strain A118

49.237

100

0.504
  luxO Vibrio cholerae strain A1552

38.063

99.107

0.377