Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JN757_RS24050 Genome accession   NZ_CP069352
Coordinates   5496707..5498296 (+) Length   529 a.a.
NCBI ID   WP_203419541.1    Uniprot ID   -
Organism   Pseudomonas granadensis isolate CT364     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5491707..5503296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN757_RS24030 (JN757_24020) pgeF 5493499..5494221 (-) 723 WP_203419538.1 peptidoglycan editing factor PgeF -
  JN757_RS24035 (JN757_24025) rluD 5494218..5495180 (-) 963 WP_203419539.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JN757_RS24040 (JN757_24030) - 5495332..5496348 (+) 1017 WP_090286399.1 outer membrane protein assembly factor BamD -
  JN757_RS24045 (JN757_24035) - 5496475..5496717 (+) 243 WP_203419540.1 PP0621 family protein -
  JN757_RS24050 (JN757_24040) pilS 5496707..5498296 (+) 1590 WP_203419541.1 ATP-binding protein Regulator
  JN757_RS24055 (JN757_24045) pilR 5498293..5499639 (+) 1347 WP_203419542.1 sigma-54 dependent transcriptional regulator Regulator
  JN757_RS24060 (JN757_24050) thiO 5499772..5500872 (-) 1101 WP_203419543.1 glycine oxidase ThiO -
  JN757_RS24065 (JN757_24055) - 5500930..5501331 (-) 402 WP_203419544.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58425.11 Da        Isoelectric Point: 6.6916

>NTDB_id=534143 JN757_RS24050 WP_203419541.1 5496707..5498296(+) (pilS) [Pseudomonas granadensis isolate CT364]
MVAEAANTDSKQAQRLLRLYHLYRLSVGITLVLLITSNMDNRLLTSANDDLLRGGSWLYLVLNILLVVFLENTRRPGQLF
SLALVDVLLLCGLFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAIAALGIVGSSFLLGLSHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDHERRVLLANHSAQILLAQSQLQGHLID
EYSPTLVERLQLWMNNPTLRPQSLKVAGNGIELQPSFIALEQSPNPRTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQAGER
QQIHLRINSGDFTTLMDPNQLRQILDNLLRNGWRHSALLHDQAEVWLALFTDPDSQLAVLEVQDNGPGVPAEEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=534143 JN757_RS24050 WP_203419541.1 5496707..5498296(+) (pilS) [Pseudomonas granadensis isolate CT364]
GTGGTCGCTGAGGCTGCCAACACCGACAGCAAACAGGCGCAGCGTCTGCTGCGTCTTTATCACCTGTACCGTCTGAGCGT
CGGCATCACCTTGGTGTTGCTGATCACGAGCAACATGGACAACCGCCTGCTGACGTCTGCCAACGACGATTTGCTGCGCG
GCGGCAGCTGGCTGTATCTGGTTCTGAATATCCTGCTGGTGGTGTTTCTCGAAAACACACGCCGGCCTGGGCAATTGTTC
AGCCTGGCTTTGGTTGACGTGCTGCTTCTGTGCGGTTTGTTCTTCGCTGCGGGCGGCGTTGGCAGTGCGCTGGGCAACTT
GCTGATCGTGTCCGTAGCGATCAGCAACACTCTGCTGCGCCGACGCATCGGTCTGTTGATTGCGGCCATCGCCGCGCTGG
GCATCGTCGGCTCAAGTTTCCTGCTCGGTTTGAGCCATCCCCTGAGCGCCAATGAATACTTGCAGGCCGGTACGCTCGGC
GCCCTGTGCTTTGCCGCCTCGCTATTGGTGCAGGGGCTGATCAGACGCCTTGAGGTCAGCGAAACCCTGGCCGAGCAGCG
CGCCAGCGAAGTGGTTGGCCTCGAAGCCCTGAATGCTCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTCCTTGATC
ATGAGCGTCGAGTTTTACTGGCCAACCACAGCGCGCAAATCCTGCTCGCTCAGTCGCAGTTGCAGGGCCACCTGATCGAC
GAATATTCGCCAACGCTGGTCGAGCGCCTGCAACTGTGGATGAACAACCCGACCCTGCGCCCGCAAAGCCTGAAAGTCGC
CGGCAATGGCATAGAACTGCAACCGAGCTTCATCGCCCTCGAACAGAGCCCGAATCCGCGCACCCTGGTGTTTCTCGAAG
ACCTCGCGCAAATCGCTCAACAGGCGCAGCAACTGAAGCTCGCCGCGCTCGGCCGATTGACCGCCGGCATCTCTCATGAA
ATCCGCAATCCGCTGGGGGCGATCAGCCATGCCGCGCAACTGTTGGCCGAGTCCGAGGAACTCGATAGTGCCGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTCTCCCGCCGCCAGC
AAAGCGCCCCGCAGCGGCTCGATCTCAAACCGTGGCTGGAGAACTTCGTTGCCGAAAGCCGCGAGCAGGCCGGCGAGCGT
CAGCAGATCCATCTGCGGATCAATTCTGGGGACTTCACCACGCTGATGGACCCGAACCAGCTGCGGCAGATTCTCGACAA
CCTGCTGCGCAACGGCTGGCGTCACAGCGCCCTGCTGCACGATCAGGCCGAGGTCTGGCTGGCGCTGTTCACTGACCCGG
ACAGCCAATTGGCGGTACTCGAAGTGCAGGACAACGGCCCCGGCGTACCGGCCGAAGAACAGGCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTGGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601