Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQ456_RS03865 Genome accession   NZ_CP069337
Coordinates   789840..790337 (+) Length   165 a.a.
NCBI ID   WP_033999905.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain E04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 784840..795337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQ456_RS03850 (JQ456_03850) bfr 784848..785312 (+) 465 WP_003093668.1 bacterioferritin -
  JQ456_RS03855 (JQ456_03855) uvrA 785384..788221 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA -
  JQ456_RS03860 (JQ456_03860) - 788435..789823 (+) 1389 WP_070698145.1 MFS transporter -
  JQ456_RS03865 (JQ456_03865) ssb 789840..790337 (+) 498 WP_033999905.1 single-stranded DNA-binding protein Machinery gene
  JQ456_RS03870 (JQ456_03870) pchA 790426..791856 (-) 1431 WP_070698146.1 isochorismate synthase PchA -
  JQ456_RS03875 (JQ456_03875) pchB 791853..792158 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  JQ456_RS03880 (JQ456_03880) pchC 792158..792913 (-) 756 WP_070698147.1 pyochelin biosynthesis editing thioesterase PchC -
  JQ456_RS03885 (JQ456_03885) pchD 792910..794553 (-) 1644 WP_070698148.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18585.51 Da        Isoelectric Point: 5.2781

>NTDB_id=534033 JQ456_RS03865 WP_033999905.1 789840..790337(+) (ssb) [Pseudomonas aeruginosa strain E04]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQVPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=534033 JQ456_RS03865 WP_033999905.1 789840..790337(+) (ssb) [Pseudomonas aeruginosa strain E04]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGTCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

53.039

100

0.582
  ssb Neisseria meningitidis MC58

47.486

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.486

100

0.515