Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQ458_RS27800 Genome accession   NZ_CP069325
Coordinates   6003012..6003509 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain R02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5998012..6008509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQ458_RS27780 (JQ458_27745) pchD 5998796..6000439 (+) 1644 WP_003118945.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  JQ458_RS27785 (JQ458_27750) pchC 6000436..6001191 (+) 756 WP_010793475.1 pyochelin biosynthesis editing thioesterase PchC -
  JQ458_RS27790 (JQ458_27755) pchB 6001191..6001496 (+) 306 WP_010793476.1 isochorismate lyase PchB -
  JQ458_RS27795 (JQ458_27760) pchA 6001493..6002923 (+) 1431 WP_003118152.1 isochorismate synthase PchA -
  JQ458_RS27800 (JQ458_27765) ssb 6003012..6003509 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  JQ458_RS27805 (JQ458_27770) - 6003526..6004914 (-) 1389 WP_003103910.1 MFS transporter -
  JQ458_RS27810 (JQ458_27775) uvrA 6005128..6007965 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA -
  JQ458_RS27815 (JQ458_27780) bfr 6008036..6008500 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=533633 JQ458_RS27800 WP_003114685.1 6003012..6003509(-) (ssb) [Pseudomonas aeruginosa strain R02]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=533633 JQ458_RS27800 WP_003114685.1 6003012..6003509(-) (ssb) [Pseudomonas aeruginosa strain R02]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515