Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JMT66_RS21490 Genome accession   NZ_CP069319
Coordinates   4537328..4537861 (-) Length   177 a.a.
NCBI ID   WP_054804260.1    Uniprot ID   A0A807LFK9
Organism   Kosakonia cowanii strain Pa82     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4532328..4542861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMT66_RS21475 (JMT66_21415) - 4533922..4534515 (-) 594 WP_232045113.1 hypothetical protein -
  JMT66_RS21480 (JMT66_21420) - 4534518..4536113 (-) 1596 WP_200580353.1 glycosyl hydrolase family 18 protein -
  JMT66_RS23995 - 4536340..4536468 (-) 129 WP_255563494.1 hypothetical protein -
  JMT66_RS21485 (JMT66_21425) - 4536719..4537261 (+) 543 WP_200580352.1 chorismate mutase -
  JMT66_RS21490 (JMT66_21430) ssb 4537328..4537861 (-) 534 WP_054804260.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JMT66_RS21495 (JMT66_21435) uvrA 4538118..4540943 (+) 2826 WP_042712659.1 excinuclease ABC subunit UvrA -
  JMT66_RS21500 (JMT66_21440) - 4540944..4541297 (-) 354 WP_042712657.1 MmcQ/YjbR family DNA-binding protein -
  JMT66_RS21505 (JMT66_21445) - 4541301..4541717 (-) 417 WP_023478512.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JMT66_RS21510 (JMT66_21450) aphA 4541816..4542526 (-) 711 WP_042712656.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18992.97 Da        Isoelectric Point: 5.2456

>NTDB_id=533522 JMT66_RS21490 WP_054804260.1 4537328..4537861(-) (ssb) [Kosakonia cowanii strain Pa82]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGGAPAGGGQQQGGWGQPQQPQGNNNQFSGGAQSRPQQQSAP
APSNNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=533522 JMT66_RS21490 WP_054804260.1 4537328..4537861(-) (ssb) [Kosakonia cowanii strain Pa82]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACGTCCGAATCGTGGCGTGACAAGGCGACCGGAGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTTGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAGTCCGGCCAGGAAAAGTACACGACCGAAGTGGTGGTGAACGTTGG
TGGCACCATGCAGATGCTGGGCGGTCGCCAGGGCGGCGGCGGTGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGGGCAACAACAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCCCCG
GCACCGTCTAACAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A807LFK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.656

100

0.774
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.593
  ssb Neisseria meningitidis MC58

45.81

100

0.463
  ssb Neisseria gonorrhoeae MS11

45.81

100

0.463