Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQN63_RS30370 Genome accession   NZ_CP069318
Coordinates   6638023..6638589 (+) Length   188 a.a.
NCBI ID   WP_016449346.1    Uniprot ID   -
Organism   Delftia lacustris strain R54     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6633023..6643589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN63_RS30360 (JQN63_30365) uvrA 6633308..6636415 (-) 3108 WP_203400132.1 excinuclease ABC subunit UvrA -
  JQN63_RS30365 (JQN63_30370) - 6636688..6637863 (+) 1176 WP_070080733.1 MFS transporter -
  JQN63_RS30370 (JQN63_30375) ssb 6638023..6638589 (+) 567 WP_016449346.1 single-stranded DNA-binding protein Machinery gene
  JQN63_RS30375 (JQN63_30380) - 6638676..6639173 (+) 498 WP_017406889.1 hypothetical protein -
  JQN63_RS30380 (JQN63_30385) - 6639229..6639375 (+) 147 WP_203400133.1 hypothetical protein -
  JQN63_RS30385 (JQN63_30390) - 6639500..6640953 (+) 1454 Protein_6129 SulP family inorganic anion transporter -
  JQN63_RS32870 - 6641350..6641658 (+) 309 WP_227468506.1 hypothetical protein -
  JQN63_RS30395 (JQN63_30400) - 6641661..6642353 (+) 693 WP_016449342.1 hypothetical protein -
  JQN63_RS30400 (JQN63_30405) paaE 6642387..6643490 (-) 1104 WP_017406892.1 1,2-phenylacetyl-CoA epoxidase subunit PaaE -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20403.55 Da        Isoelectric Point: 5.9554

>NTDB_id=533503 JQN63_RS30370 WP_016449346.1 6638023..6638589(+) (ssb) [Delftia lacustris strain R54]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPA
QRPAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=533503 JQN63_RS30370 WP_016449346.1 6638023..6638589(+) (ssb) [Delftia lacustris strain R54]
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACCTCGGGCGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGCGCCGACACCATGCA
GATGCTGGGCAGCCGCCAAGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTATGGCGATGAAGGCTATGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCCCCTGCC
CAGCGCCCCGCTCCCGCACCCATGGCACCCCCGCCCCAGCGCGCGGCCTCGGGCTTTGACGACATGGATGACGACATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.553
  ssb Glaesserella parasuis strain SC1401

53.093

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.032

100

0.463
  ssb Neisseria meningitidis MC58

44.974

100

0.452