Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JOJ89_RS21010 Genome accession   NZ_CP069296
Coordinates   4133489..4134016 (-) Length   175 a.a.
NCBI ID   WP_203289290.1    Uniprot ID   -
Organism   Metabacillus sp. cB07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4128489..4139016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOJ89_RS20990 rplI 4129496..4129942 (-) 447 WP_203289289.1 50S ribosomal protein L9 -
  JOJ89_RS20995 - 4129939..4131918 (-) 1980 WP_029282954.1 DHH family phosphoesterase -
  JOJ89_RS21000 - 4132003..4132932 (-) 930 WP_029282952.1 YybS family protein -
  JOJ89_RS21005 rpsR 4133203..4133442 (-) 240 WP_029282950.1 30S ribosomal protein S18 -
  JOJ89_RS21010 ssbA 4133489..4134016 (-) 528 WP_203289290.1 single-stranded DNA-binding protein Machinery gene
  JOJ89_RS21015 rpsF 4134056..4134343 (-) 288 WP_029282946.1 30S ribosomal protein S6 -
  JOJ89_RS21020 ychF 4134457..4135557 (-) 1101 WP_203289291.1 redox-regulated ATPase YchF -
  JOJ89_RS21025 - 4135794..4135991 (-) 198 WP_203290408.1 DUF951 family protein -
  JOJ89_RS21030 - 4135988..4136857 (-) 870 WP_203290409.1 mechanosensitive ion channel family protein -
  JOJ89_RS21035 yyaC 4137056..4137679 (+) 624 WP_029282937.1 spore protease YyaC -
  JOJ89_RS21040 - 4137682..4138383 (-) 702 WP_029282935.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18979.67 Da        Isoelectric Point: 4.9528

>NTDB_id=533425 JOJ89_RS21010 WP_203289290.1 4133489..4134016(-) (ssbA) [Metabacillus sp. cB07]
MMNRVVLVGRLTKDPELRYTPAGAAVATFTLAVNRAFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRLQSR
SYEDQTGKRVYVTEVVAESVQFLEPKSGGGGNSGGGGNNNYYGGGQGGQGGQQNPFSQNQNQNQNQRNQGRSNFDDDPFA
NDGKPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=533425 JOJ89_RS21010 WP_203289290.1 4133489..4134016(-) (ssbA) [Metabacillus sp. cB07]
ATGATGAACCGGGTTGTTTTAGTCGGCAGACTAACAAAAGATCCAGAACTGCGCTACACTCCAGCCGGAGCGGCAGTTGC
TACTTTTACATTAGCTGTAAACCGTGCCTTCACAAACCAGCAGGGCGAAAGAGAAGCGGACTTCATTAACTGTGTCGTAT
GGCGCCGTCCAGCCGAAAACGTTGCAAACTTCCTTAAAAAAGGCAGTCTTGCGGGCGTTGATGGACGTCTTCAGTCACGC
AGCTATGAAGACCAGACTGGCAAGCGCGTATACGTAACCGAAGTGGTTGCAGAAAGCGTCCAGTTCCTTGAGCCTAAAAG
CGGCGGTGGTGGAAACAGCGGCGGTGGCGGAAACAACAATTATTACGGCGGAGGCCAGGGTGGACAAGGCGGACAGCAAA
ATCCATTCAGCCAAAACCAAAATCAAAATCAGAATCAGCGTAATCAAGGGCGTTCGAACTTTGATGACGATCCATTCGCT
AACGATGGAAAGCCGATTGATATCTCTGATGATGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

78.857

100

0.789
  ssb Latilactobacillus sakei subsp. sakei 23K

57.143

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

60.571

0.389
  ssb Glaesserella parasuis strain SC1401

36.216

100

0.383