Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JQS73_RS19665 Genome accession   NZ_CP069280
Coordinates   4073978..4074424 (-) Length   148 a.a.
NCBI ID   WP_041349300.1    Uniprot ID   -
Organism   Clostridium botulinum strain IBCA10-7060     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4068978..4079424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQS73_RS19640 (JQS73_19640) rplI 4069807..4070250 (-) 444 WP_003359455.1 50S ribosomal protein L9 -
  JQS73_RS19645 (JQS73_19645) - 4070250..4072235 (-) 1986 WP_041349295.1 DHH family phosphoesterase -
  JQS73_RS19650 (JQS73_19650) - 4072236..4073240 (-) 1005 WP_041349296.1 YybS family protein -
  JQS73_RS19655 (JQS73_19655) - 4073252..4073569 (-) 318 WP_003359330.1 MazG-like family protein -
  JQS73_RS19660 (JQS73_19660) rpsR 4073717..4073959 (-) 243 WP_041349298.1 30S ribosomal protein S18 -
  JQS73_RS19665 (JQS73_19665) ssbA 4073978..4074424 (-) 447 WP_041349300.1 single-stranded DNA-binding protein Machinery gene
  JQS73_RS19670 (JQS73_19670) rpsF 4074440..4074724 (-) 285 WP_041349302.1 30S ribosomal protein S6 -
  JQS73_RS19675 (JQS73_19675) - 4074830..4075978 (-) 1149 WP_041349305.1 double-cubane-cluster-containing anaerobic reductase -
  JQS73_RS19680 (JQS73_19680) - 4076251..4076448 (-) 198 WP_003398916.1 DUF951 domain-containing protein -
  JQS73_RS19685 (JQS73_19685) - 4076464..4077333 (-) 870 WP_041349307.1 mechanosensitive ion channel family protein -
  JQS73_RS19690 (JQS73_19690) - 4077340..4077585 (-) 246 WP_003361815.1 DUF3343 domain-containing protein -
  JQS73_RS19695 (JQS73_19695) - 4077776..4078930 (+) 1155 WP_041349309.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16398.20 Da        Isoelectric Point: 4.6619

>NTDB_id=533285 JQS73_RS19665 WP_041349300.1 4073978..4074424(-) (ssbA) [Clostridium botulinum strain IBCA10-7060]
MNKVVLIGRLTKDPELRFTPGNGTAVATFTLAVDRRFSKDGQREADFIPIVVWGKQAESTANYMSKGKLMGVSGRIQTRS
YEAKDGTRRYVTEVIAEEVKFLEWGSKPTTDSTYNNGSEPSYQSGQGFGNENSFDDDIIPVDDGDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=533285 JQS73_RS19665 WP_041349300.1 4073978..4074424(-) (ssbA) [Clostridium botulinum strain IBCA10-7060]
ATGAATAAAGTTGTTTTAATAGGTAGATTAACCAAAGATCCTGAGTTAAGATTTACTCCAGGAAATGGGACAGCAGTTGC
CACCTTTACTTTGGCTGTAGATAGAAGATTTTCAAAAGATGGCCAGAGAGAAGCAGATTTCATCCCTATAGTAGTATGGG
GAAAACAAGCAGAATCTACAGCTAACTATATGAGTAAAGGAAAACTTATGGGGGTTAGTGGTAGAATTCAAACAAGAAGC
TATGAAGCTAAAGATGGTACAAGAAGATATGTAACAGAAGTCATAGCTGAAGAAGTTAAATTTCTTGAGTGGGGCAGTAA
GCCTACAACGGATTCAACATATAATAATGGGTCAGAACCAAGTTACCAATCAGGCCAAGGCTTTGGAAATGAAAACAGTT
TTGACGACGATATAATTCCAGTGGATGATGGAGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.256

100

0.561
  ssb Latilactobacillus sakei subsp. sakei 23K

47.761

90.541

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50

79.73

0.399
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.311

69.595

0.392