Detailed information NTG0532943

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: LA346_RS06230
• Genome accession: NZ_CP083627
• Coordinates: 1157687..1158685 (+)
• Length: 332 a.a.
• NCBI ID: WP_001810210.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain FDAARGOS_1508
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1152687..1163685

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LA346_RS06210 (LA346_06210)	leuS	1152805..1155306 (+)	2502	WP_000011786.1	leucine--tRNA ligase	-
LA346_RS06215 (LA346_06215)	-	1155501..1156196 (+)	696	WP_001144906.1	GNAT family N-acetyltransferase	-
LA346_RS06220 (LA346_06220)	-	1156208..1156624 (+)	417	WP_000628395.1	GNAT family N-acetyltransferase	-
LA346_RS06225 (LA346_06225)	-	1157461..1157553 (-)	93	WP_000970381.1	type I toxin-antitoxin system Fst family toxin	-
LA346_RS06230 (LA346_06230)	ruvB	1157687..1158685 (+)	999	WP_001810210.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LA346_RS06235 (LA346_06235)	-	1158666..1159238 (+)	573	Protein_1197	nucleotidyltransferase family protein	-
LA346_RS06240 (LA346_06240)	-	1159469..1160227 (+)	759	WP_000466719.1	isoprenyl transferase	-
LA346_RS06245 (LA346_06245)	-	1160236..1161039 (+)	804	WP_000189857.1	phosphatidate cytidylyltransferase	-
LA346_RS06250 (LA346_06250)	eeP	1161061..1162320 (+)	1260	WP_000900660.1	RIP metalloprotease RseP	Regulator

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37258.70 Da
• Isoelectric Point: 4.5053

>NTDB_id=532943 LA346_RS06230 WP_001810210.1 1157687..1158685(+) (ruvB) [Streptococcus pneumoniae strain FDAARGOS_1508]
MGRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DIITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=532943 LA346_RS06230 WP_001810210.1 1157687..1158685(+) (ruvB) [Streptococcus pneumoniae strain FDAARGOS_1508]
ATGGGTAGAATTTTAGATAATGAGATAATGGGGGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATCGGACAGGATAAGGTCAAGGACCAGCTACAAATCTTTATTGAAGCTGCAAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGGCCTCCAGGTCTCGGGAAAACGACCATGGCCTTTGTTATTGCCAACGAACTGGGAGTCAATCTT
AAGCAGACGTCGGGTCCAGTCATTGAAAAAGCCGGAGATCTGGTAGCTATTTTGAATGAGTTAGAGCCTGGGGATGTCCT
TTTTATTGATGAGATCCATCGTTTGCCAATGTCAGTGGAAGAGGTGCTTTATAGTGCTATGGAGGACTTCTACATAGATA
TTATGATTGGGGCTGGTGAAGGCAGTCGCAGTGTTCATTTGGAGTTGCCTCCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCAAATCCACTACGGGCACGTTTTGGGATTACAGGTCATATGGAGTATTATGCCCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGAACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATCGAT
GATATTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
TACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTCAATATCGCCGAAGAGCGTGAGACAG
TTGAAGACATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	99.699	100	0.997
ruvB	Streptococcus pneumoniae D39	99.699	100	0.997
ruvB	Streptococcus pneumoniae TIGR4	98.795	100	0.988
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47