Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQC75_RS02475 Genome accession   NZ_CP069213
Coordinates   555955..556653 (+) Length   232 a.a.
NCBI ID   WP_203325927.1    Uniprot ID   -
Organism   Shewanella litorisediminis strain SMK1-12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 550955..561653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC75_RS02465 (JQC75_02465) uvrA 551467..554295 (-) 2829 WP_203325925.1 excinuclease ABC subunit UvrA -
  JQC75_RS02470 (JQC75_02470) - 554552..555919 (+) 1368 WP_203325926.1 MFS transporter -
  JQC75_RS02475 (JQC75_02475) ssb 555955..556653 (+) 699 WP_203325927.1 single-stranded DNA-binding protein Machinery gene
  JQC75_RS02480 (JQC75_02480) - 556934..557620 (+) 687 WP_203325928.1 arginine N-succinyltransferase -
  JQC75_RS02485 (JQC75_02485) ybaK 557866..558339 (+) 474 WP_203325929.1 Cys-tRNA(Pro) deacylase -
  JQC75_RS02490 (JQC75_02490) - 558539..560110 (+) 1572 WP_203325930.1 methyl-accepting chemotaxis protein -
  JQC75_RS02495 (JQC75_02495) - 560348..561349 (+) 1002 WP_203325931.1 NAD(P)H-quinone oxidoreductase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25153.47 Da        Isoelectric Point: 5.2341

>NTDB_id=532910 JQC75_RS02475 WP_203325927.1 555955..556653(+) (ssb) [Shewanella litorisediminis strain SMK1-12]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDNQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYTTEIVVDQSGSMQMLGGRSQGQGQGAPAAGQGGQPQGGYSAPAQNQYAPAPQAAQPSYSAPAQ
QPQQAAYQPPQQAQGGYGQQAPQQQGGYQSKPQPAAPAYQPQQAPQQRPAPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 699 bp        

>NTDB_id=532910 JQC75_RS02475 WP_203325927.1 555955..556653(+) (ssb) [Shewanella litorisediminis strain SMK1-12]
ATGGCCAGTCGTGGTGTGAATAAAGTGATCCTGGTAGGTAACCTGGGGCAAGACCCTGAGGTGCGCTACATGCCCAACGG
CAATGCGGTAGCCAATATCACGGTCGCCACCAGCGAGTCCTGGAAGGACAACCAAGGTCAACAGCAGGAGCGTACCGAAT
GGCACCGTGTGGTGATGTTTGGCAAGCTGGCTGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCTCAGGTTTACCTGGAA
GGCAAGCTGCAAACCCGTAAGTGGAAAGATCAGAGTGGTCAGGACAGATACACCACTGAAATCGTAGTGGATCAGAGCGG
CAGCATGCAGATGCTCGGCGGTCGCAGTCAGGGTCAGGGCCAGGGCGCGCCTGCGGCTGGTCAGGGTGGTCAGCCTCAGG
GGGGGTACAGTGCACCTGCCCAAAACCAATATGCCCCAGCCCCTCAGGCCGCTCAGCCAAGCTACAGCGCGCCAGCTCAG
CAGCCTCAGCAAGCAGCGTATCAGCCGCCACAACAGGCTCAGGGTGGTTATGGCCAGCAGGCGCCACAGCAGCAGGGCGG
TTATCAGAGCAAACCTCAGCCGGCTGCTCCCGCTTACCAGCCACAACAGGCACCACAGCAGCGTCCAGCGCCTCAGCCAC
AGCAGCAGAACTACACGCCTGATCTCGATGACGGCTGGGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.165

100

0.543
  ssb Glaesserella parasuis strain SC1401

46.552

100

0.466
  ssb Neisseria gonorrhoeae MS11

53.614

71.552

0.384
  ssb Neisseria meningitidis MC58

53.049

70.69

0.375