Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQM61_RS21190 Genome accession   NZ_CP069198
Coordinates   4525727..4526224 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 152962     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4520727..4531224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQM61_RS21170 (JQM61_21170) pchD 4521511..4523154 (+) 1644 WP_023129395.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  JQM61_RS21175 (JQM61_21175) pchC 4523151..4523906 (+) 756 WP_010793475.1 pyochelin biosynthesis editing thioesterase PchC -
  JQM61_RS21180 (JQM61_21180) pchB 4523906..4524211 (+) 306 WP_010793476.1 isochorismate lyase PchB -
  JQM61_RS21185 (JQM61_21185) pchA 4524208..4525638 (+) 1431 WP_003114686.1 isochorismate synthase PchA -
  JQM61_RS21190 (JQM61_21190) ssb 4525727..4526224 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  JQM61_RS21195 (JQM61_21195) - 4526241..4527629 (-) 1389 WP_009316331.1 MFS transporter -
  JQM61_RS21200 (JQM61_21200) uvrA 4527843..4530680 (+) 2838 WP_003121863.1 excinuclease ABC subunit UvrA -
  JQM61_RS21205 (JQM61_21205) bfr 4530752..4531216 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=532864 JQM61_RS21190 WP_003114685.1 4525727..4526224(-) (ssb) [Pseudomonas aeruginosa strain 152962]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=532864 JQM61_RS21190 WP_003114685.1 4525727..4526224(-) (ssb) [Pseudomonas aeruginosa strain 152962]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515