Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | JOS67_RS03525 | Genome accession | NZ_CP069195 |
| Coordinates | 623568..624182 (-) | Length | 204 a.a. |
| NCBI ID | WP_031780576.1 | Uniprot ID | A0A0T7EDM0 |
| Organism | Vibrio diabolicus strain SLV18 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 605426..623422 | 623568..624182 | flank | 146 |
Gene organization within MGE regions
Location: 605426..624182
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JOS67_RS03440 (JOS67_03435) | rpsP | 605426..605674 (+) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
| JOS67_RS03445 (JOS67_03440) | rimM | 605704..606252 (+) | 549 | WP_005379964.1 | ribosome maturation factor RimM | - |
| JOS67_RS03450 (JOS67_03445) | trmD | 606280..607023 (+) | 744 | WP_203346927.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| JOS67_RS03455 (JOS67_03450) | rplS | 607065..607418 (+) | 354 | WP_005379971.1 | 50S ribosomal protein L19 | - |
| JOS67_RS03460 (JOS67_03455) | yacG | 608084..608278 (-) | 195 | WP_005396692.1 | DNA gyrase inhibitor YacG | - |
| JOS67_RS03465 (JOS67_03460) | zapD | 608438..609178 (-) | 741 | WP_005396691.1 | cell division protein ZapD | - |
| JOS67_RS03470 (JOS67_03465) | coaE | 609206..609820 (-) | 615 | WP_047008979.1 | dephospho-CoA kinase | - |
| JOS67_RS03475 (JOS67_03470) | pilD | 609821..610690 (-) | 870 | WP_012841418.1 | prepilin peptidase | Machinery gene |
| JOS67_RS03480 (JOS67_03475) | pilC | 610755..611978 (-) | 1224 | WP_074191781.1 | type II secretion system F family protein | Machinery gene |
| JOS67_RS03485 (JOS67_03480) | pilB | 612002..613687 (-) | 1686 | WP_203346928.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JOS67_RS03490 (JOS67_03485) | pilA | 613699..614136 (-) | 438 | WP_203346929.1 | pilin | Machinery gene |
| JOS67_RS03495 (JOS67_03490) | nadC | 614399..615286 (-) | 888 | WP_047102656.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| JOS67_RS03500 (JOS67_03495) | ampD | 615379..615930 (+) | 552 | WP_012841421.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| JOS67_RS03505 (JOS67_03500) | pdhR | 616336..617103 (+) | 768 | WP_005396680.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| JOS67_RS03510 (JOS67_03505) | aceE | 617152..619815 (+) | 2664 | WP_005396679.1 | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | - |
| JOS67_RS03515 (JOS67_03510) | aceF | 619835..621727 (+) | 1893 | WP_203346930.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
| JOS67_RS03520 (JOS67_03515) | lpdA | 621995..623422 (+) | 1428 | WP_005379993.1 | dihydrolipoyl dehydrogenase | - |
| JOS67_RS03525 (JOS67_03520) | opaR | 623568..624182 (-) | 615 | WP_031780576.1 | transcriptional regulator OpaR | Regulator |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23612.89 Da Isoelectric Point: 6.4042
>NTDB_id=532825 JOS67_RS03525 WP_031780576.1 623568..624182(-) (opaR) [Vibrio diabolicus strain SLV18]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKSEAELKHLVSSYLDMLCIYNREH
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKSEAELKHLVSSYLDMLCIYNREH
Nucleotide
Download Length: 615 bp
>NTDB_id=532825 JOS67_RS03525 WP_031780576.1 623568..624182(-) (opaR) [Vibrio diabolicus strain SLV18]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCCCCGATCAAACGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTGTTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACCGTTT
TTAACTACTTCCCGACTCGTGAAGACTTAGTGGATGAAGTACTCAACCACGTCGTACGTCAGTTCTCGAACTTCCTATCG
GATAACATTGACTTAGACCTACACGCGCGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
TTGTCACTGGCTAAAAGTTTGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCGATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACTTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGTGCAAAAAGTGAAGCGGAACTTAA
GCACCTTGTTAGTTCATACTTAGACATGCTTTGCATTTACAACCGTGAACACTAA
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCCCCGATCAAACGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTGTTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACCGTTT
TTAACTACTTCCCGACTCGTGAAGACTTAGTGGATGAAGTACTCAACCACGTCGTACGTCAGTTCTCGAACTTCCTATCG
GATAACATTGACTTAGACCTACACGCGCGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
TTGTCACTGGCTAAAAGTTTGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCGATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACTTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGTGCAAAAAGTGAAGCGGAACTTAA
GCACCTTGTTAGTTCATACTTAGACATGCTTTGCATTTACAACCGTGAACACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
97.059 |
100 |
0.971 |
| hapR | Vibrio cholerae C6706 |
73.232 |
97.059 |
0.711 |
| hapR | Vibrio cholerae strain A1552 |
73.232 |
97.059 |
0.711 |