Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LLNCDO700_RS12490 Genome accession   NZ_CP069179
Coordinates   2438751..2439251 (-) Length   166 a.a.
NCBI ID   WP_011677241.1    Uniprot ID   A0A0M2ZSZ2
Organism   Lactococcus cremoris strain NCDO700     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2433751..2444251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNCDO700_RS12465 (LLNCDO700_12415) gnd 2434877..2435782 (-) 906 WP_011836101.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  LLNCDO700_RS12470 (LLNCDO700_12420) - 2436151..2436999 (+) 849 WP_011836102.1 MurR/RpiR family transcriptional regulator -
  LLNCDO700_RS12475 (LLNCDO700_12425) - 2437038..2437346 (+) 309 WP_011836103.1 DUF960 domain-containing protein -
  LLNCDO700_RS12480 (LLNCDO700_12430) - 2437418..2438203 (-) 786 WP_011836104.1 metallophosphoesterase -
  LLNCDO700_RS12485 (LLNCDO700_12435) rpsR 2438334..2438579 (-) 246 WP_003131952.1 30S ribosomal protein S18 -
  LLNCDO700_RS12490 (LLNCDO700_12440) ssb 2438751..2439251 (-) 501 WP_011677241.1 single-stranded DNA-binding protein Machinery gene
  LLNCDO700_RS12495 (LLNCDO700_12445) rpsF 2439281..2439574 (-) 294 WP_011677242.1 30S ribosomal protein S6 -
  LLNCDO700_RS12500 (LLNCDO700_12450) - 2439768..2440622 (-) 855 WP_042748545.1 undecaprenyl-diphosphate phosphatase -
  LLNCDO700_RS12505 (LLNCDO700_12455) - 2441144..2442610 (+) 1467 WP_042748546.1 amino acid permease -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18233.05 Da        Isoelectric Point: 5.2166

>NTDB_id=532766 LLNCDO700_RS12490 WP_011677241.1 2438751..2439251(-) (ssb) [Lactococcus cremoris strain NCDO700]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=532766 LLNCDO700_RS12490 WP_011677241.1 2438751..2439251(-) (ssb) [Lactococcus cremoris strain NCDO700]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
AACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2ZSZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.395

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.361