Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JNO51_RS05285 Genome accession   NZ_CP069163
Coordinates   1105720..1106220 (-) Length   166 a.a.
NCBI ID   WP_215781976.1    Uniprot ID   -
Organism   Paludibacterium sp. B53371     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1100720..1111220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO51_RS05260 - 1100757..1101644 (-) 888 WP_215781972.1 LysR family transcriptional regulator -
  JNO51_RS05265 mdtH 1101740..1102966 (+) 1227 WP_215781973.1 multidrug efflux MFS transporter MdtH -
  JNO51_RS05270 - 1103097..1103903 (+) 807 WP_215781974.1 ABC transporter substrate-binding protein -
  JNO51_RS05275 - 1103982..1104503 (+) 522 WP_215782664.1 TIGR00645 family protein -
  JNO51_RS05280 - 1104591..1105247 (-) 657 WP_215781975.1 hypothetical protein -
  JNO51_RS05285 ssb 1105720..1106220 (-) 501 WP_215781976.1 single-stranded DNA-binding protein Machinery gene
  JNO51_RS05290 - 1106221..1107582 (-) 1362 WP_215781977.1 MFS transporter -
  JNO51_RS05295 uvrA 1107704..1110520 (+) 2817 WP_215781978.1 excinuclease ABC subunit UvrA -
  JNO51_RS05300 - 1110579..1111022 (+) 444 WP_215781979.1 VOC family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18126.08 Da        Isoelectric Point: 5.3162

>NTDB_id=532590 JNO51_RS05285 WP_215781976.1 1105720..1106220(-) (ssb) [Paludibacterium sp. B53371]
MASVNKVILVGNLGRDPEVRYMPSGDAIATLSIATTDSWMDKSSGQRQEQTEWHRVVFFGKTAEVASQYLKKGSQVYVEG
SIRTRKWQDKETGQDRYSTEIRGDRMQMLGGKSGGGSAPMDGGDDYGYQGGRNDAPPAPAAAPAAPRRQESRPAPKLDDI
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=532590 JNO51_RS05285 WP_215781976.1 1105720..1106220(-) (ssb) [Paludibacterium sp. B53371]
ATGGCGTCCGTCAACAAAGTGATTCTCGTCGGCAATCTCGGCCGCGACCCGGAAGTGCGCTACATGCCGTCCGGCGACGC
GATCGCCACCCTGTCGATCGCCACCACCGACAGCTGGATGGACAAATCGTCCGGCCAGCGTCAGGAACAAACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAAACCGCCGAAGTGGCCTCGCAGTACCTGAAAAAGGGCTCGCAGGTCTACGTTGAAGGT
TCCATCCGCACCCGCAAGTGGCAGGACAAGGAAACCGGCCAGGACCGCTACAGCACCGAAATCCGCGGTGACCGCATGCA
AATGCTGGGTGGCAAGAGCGGCGGCGGCAGCGCCCCGATGGACGGCGGTGACGATTACGGCTATCAGGGTGGCCGCAACG
ACGCCCCGCCGGCACCGGCTGCCGCCCCGGCCGCACCGCGCCGCCAGGAATCGCGCCCGGCACCGAAGCTGGATGATATC
GACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.723

100

0.608
  ssb Vibrio cholerae strain A1552

53.889

100

0.584
  ssb Neisseria gonorrhoeae MS11

50.847

100

0.542
  ssb Neisseria meningitidis MC58

50.282

100

0.536