Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JNO49_RS06675 Genome accession   NZ_CP069162
Coordinates   1434070..1434570 (-) Length   166 a.a.
NCBI ID   WP_028534148.1    Uniprot ID   -
Organism   Paludibacterium yongneupense strain BCRC 80531     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1429070..1439570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO49_RS06655 - 1429951..1430610 (-) 660 WP_156876826.1 hypothetical protein -
  JNO49_RS06660 - 1430786..1431859 (-) 1074 WP_028534147.1 hypothetical protein -
  JNO49_RS20940 - 1432870..1433262 (+) 393 Protein_1316 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  JNO49_RS20945 - 1433250..1433954 (+) 705 WP_281424684.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  JNO49_RS06675 ssb 1434070..1434570 (-) 501 WP_028534148.1 single-stranded DNA-binding protein Machinery gene
  JNO49_RS06680 - 1434570..1435931 (-) 1362 WP_028534149.1 MFS transporter -
  JNO49_RS06685 uvrA 1436072..1438891 (+) 2820 WP_028534150.1 excinuclease ABC subunit UvrA -
  JNO49_RS06690 - 1438999..1439442 (+) 444 WP_028534151.1 VOC family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18263.29 Da        Isoelectric Point: 5.3243

>NTDB_id=532570 JNO49_RS06675 WP_028534148.1 1434070..1434570(-) (ssb) [Paludibacterium yongneupense strain BCRC 80531]
MASVNKVIVVGNLGRDPEVRYMPSGDAIATLSVATTDNWTDKTTGQRQESTEWHRVVFFGKTAEVAGQYLKKGSQIYVEG
SLRTRKWTDKEGQERFTTEIRGDRMQMLGGRSGGGSSAPMDDGGDYGDYSQQQAPAQAPRQAPAAPRRMEAKPAPKMDDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=532570 JNO49_RS06675 WP_028534148.1 1434070..1434570(-) (ssb) [Paludibacterium yongneupense strain BCRC 80531]
ATGGCGTCCGTCAACAAAGTCATCGTCGTGGGCAATCTCGGCCGCGACCCGGAAGTCCGTTACATGCCGTCGGGCGATGC
CATCGCGACCCTGTCGGTCGCCACCACCGACAACTGGACCGACAAGACCACCGGTCAGCGGCAGGAAAGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGACGGCGGAAGTCGCCGGCCAGTATCTGAAGAAGGGTTCTCAGATTTACGTCGAAGGC
TCGCTGCGCACGCGCAAGTGGACCGACAAGGAAGGTCAGGAGCGCTTCACCACCGAAATCCGCGGCGATCGCATGCAAAT
GCTGGGCGGTCGTAGCGGCGGCGGCAGCAGCGCGCCGATGGACGACGGCGGCGACTACGGCGACTACTCGCAGCAGCAGG
CTCCGGCCCAGGCCCCGCGCCAGGCGCCGGCCGCTCCGCGCCGCATGGAAGCCAAGCCGGCTCCGAAAATGGACGATATG
GACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.396

100

0.596
  ssb Vibrio cholerae strain A1552

50.282

100

0.536
  ssb Neisseria gonorrhoeae MS11

48.864

100

0.518
  ssb Neisseria meningitidis MC58

48.295

100

0.512