Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JNO50_RS05645 Genome accession   NZ_CP069161
Coordinates   1239216..1239719 (-) Length   167 a.a.
NCBI ID   WP_189532448.1    Uniprot ID   A0A918P250
Organism   Paludibacterium paludis strain BCRC 80514     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1234216..1244719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO50_RS05625 - 1234396..1235244 (-) 849 WP_189532440.1 cyclase family protein -
  JNO50_RS05630 - 1235225..1236811 (-) 1587 WP_189532442.1 ATP-binding cassette domain-containing protein -
  JNO50_RS05635 mscL 1237362..1237823 (-) 462 WP_189532444.1 large conductance mechanosensitive channel protein MscL -
  JNO50_RS05640 galE 1237888..1238919 (-) 1032 WP_189532446.1 UDP-glucose 4-epimerase GalE -
  JNO50_RS05645 ssb 1239216..1239719 (-) 504 WP_189532448.1 single-stranded DNA-binding protein Machinery gene
  JNO50_RS05650 - 1239719..1241080 (-) 1362 WP_189532450.1 MFS transporter -
  JNO50_RS05655 uvrA 1241214..1244036 (+) 2823 WP_189532452.1 excinuclease ABC subunit UvrA -
  JNO50_RS05660 - 1244115..1244573 (+) 459 WP_189532454.1 VOC family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18321.31 Da        Isoelectric Point: 5.3243

>NTDB_id=532549 JNO50_RS05645 WP_189532448.1 1239216..1239719(-) (ssb) [Paludibacterium paludis strain BCRC 80514]
MASVNKVILVGNLGRDPEVRYMPSGDAVATLSVATTDTWTDKSSGQRQESTEWHRVVFFGKTAEVAAQYLKKGSQVYVEG
SIRTRKWQDKETGQDRFSTEIRGDRMQMLGGRNSGGSAPMDGGDDYGGGYSAPAPRQEAQSAPPPAPRRMEAKPVQKFDD
MDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=532549 JNO50_RS05645 WP_189532448.1 1239216..1239719(-) (ssb) [Paludibacterium paludis strain BCRC 80514]
ATGGCGTCCGTCAACAAAGTGATTCTTGTCGGCAACCTCGGCCGCGATCCCGAAGTGCGTTACATGCCTTCGGGCGACGC
CGTGGCCACGCTGTCCGTCGCCACGACCGACACCTGGACGGACAAATCTTCCGGCCAGCGCCAGGAAAGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGCAAAACCGCCGAAGTGGCCGCGCAGTATCTGAAAAAAGGCTCGCAAGTCTACGTGGAAGGT
TCGATCCGCACCCGCAAATGGCAGGACAAGGAAACCGGCCAGGATCGCTTCAGCACCGAAATCCGCGGTGACCGCATGCA
GATGCTCGGTGGCCGCAACAGCGGCGGCAGCGCCCCGATGGACGGTGGCGACGATTACGGTGGCGGCTACAGCGCGCCGG
CTCCGCGTCAGGAAGCGCAATCCGCTCCGCCCCCGGCTCCGCGCCGCATGGAGGCCAAGCCGGTGCAGAAGTTCGACGAT
ATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.973

100

0.587
  ssb Vibrio cholerae strain A1552

50

100

0.557
  ssb Neisseria gonorrhoeae MS11

51.977

100

0.551
  ssb Neisseria meningitidis MC58

51.412

100

0.545