Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JNE42_RS11700 Genome accession   NZ_CP069098
Coordinates   2274381..2274674 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain 63-2-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2269381..2279674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS11650 (JNE42_11650) sinR 2269545..2269880 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  JNE42_RS11655 (JNE42_11655) tasA 2269948..2270748 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  JNE42_RS11660 (JNE42_11660) sipW 2270807..2271379 (-) 573 WP_058336655.1 signal peptidase I SipW -
  JNE42_RS11665 (JNE42_11665) tapA 2271429..2271956 (-) 528 WP_100325311.1 amyloid fiber anchoring/assembly protein TapA -
  JNE42_RS11670 (JNE42_11670) - 2272209..2272535 (+) 327 WP_100325310.1 DUF3889 domain-containing protein -
  JNE42_RS11675 (JNE42_11675) - 2272570..2272764 (-) 195 WP_024718846.1 YqzE family protein -
  JNE42_RS11680 (JNE42_11680) - 2272825..2273208 (-) 384 WP_058336652.1 competence type IV pilus minor pilin ComGG -
  JNE42_RS11685 (JNE42_11685) comGF 2273205..2273702 (-) 498 WP_039166031.1 competence type IV pilus minor pilin ComGF -
  JNE42_RS11690 (JNE42_11690) comGE 2273644..2273958 (-) 315 WP_007501227.1 competence type IV pilus minor pilin ComGE -
  JNE42_RS11695 (JNE42_11695) comGD 2273942..2274388 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  JNE42_RS11700 (JNE42_11700) comGC 2274381..2274674 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  JNE42_RS11705 (JNE42_11705) comGB 2274691..2275731 (-) 1041 WP_058336649.1 competence type IV pilus assembly protein ComGB -
  JNE42_RS11710 (JNE42_11710) comGA 2275712..2276782 (-) 1071 WP_100325309.1 competence type IV pilus ATPase ComGA Machinery gene
  JNE42_RS11715 (JNE42_11715) - 2277241..2278113 (-) 873 WP_041506953.1 STAS domain-containing protein -
  JNE42_RS11725 (JNE42_11725) - 2278339..2278719 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  JNE42_RS11730 (JNE42_11730) - 2278932..2279174 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=532331 JNE42_RS11700 WP_008342186.1 2274381..2274674(-) (comGC) [Bacillus altitudinis strain 63-2-2]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=532331 JNE42_RS11700 WP_008342186.1 2274381..2274674(-) (comGC) [Bacillus altitudinis strain 63-2-2]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCAAATGGAAAGGCAATTTTCATTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392