Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JNE42_RS11710 Genome accession   NZ_CP069098
Coordinates   2275712..2276782 (-) Length   356 a.a.
NCBI ID   WP_100325309.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 63-2-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2270712..2281782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS11660 (JNE42_11660) sipW 2270807..2271379 (-) 573 WP_058336655.1 signal peptidase I SipW -
  JNE42_RS11665 (JNE42_11665) tapA 2271429..2271956 (-) 528 WP_100325311.1 amyloid fiber anchoring/assembly protein TapA -
  JNE42_RS11670 (JNE42_11670) - 2272209..2272535 (+) 327 WP_100325310.1 DUF3889 domain-containing protein -
  JNE42_RS11675 (JNE42_11675) - 2272570..2272764 (-) 195 WP_024718846.1 YqzE family protein -
  JNE42_RS11680 (JNE42_11680) - 2272825..2273208 (-) 384 WP_058336652.1 competence type IV pilus minor pilin ComGG -
  JNE42_RS11685 (JNE42_11685) comGF 2273205..2273702 (-) 498 WP_039166031.1 competence type IV pilus minor pilin ComGF -
  JNE42_RS11690 (JNE42_11690) comGE 2273644..2273958 (-) 315 WP_007501227.1 competence type IV pilus minor pilin ComGE -
  JNE42_RS11695 (JNE42_11695) comGD 2273942..2274388 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  JNE42_RS11700 (JNE42_11700) comGC 2274381..2274674 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  JNE42_RS11705 (JNE42_11705) comGB 2274691..2275731 (-) 1041 WP_058336649.1 competence type IV pilus assembly protein ComGB -
  JNE42_RS11710 (JNE42_11710) comGA 2275712..2276782 (-) 1071 WP_100325309.1 competence type IV pilus ATPase ComGA Machinery gene
  JNE42_RS11715 (JNE42_11715) - 2277241..2278113 (-) 873 WP_041506953.1 STAS domain-containing protein -
  JNE42_RS11725 (JNE42_11725) - 2278339..2278719 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  JNE42_RS11730 (JNE42_11730) - 2278932..2279174 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  JNE42_RS11735 (JNE42_11735) - 2279223..2279861 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  JNE42_RS11740 (JNE42_11740) - 2280022..2280195 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  JNE42_RS11745 (JNE42_11745) - 2280220..2280534 (-) 315 WP_056705254.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40336.68 Da        Isoelectric Point: 9.0418

>NTDB_id=532332 JNE42_RS11710 WP_100325309.1 2275712..2276782(-) (comGA) [Bacillus altitudinis strain 63-2-2]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRKPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASTRLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTVNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=532332 JNE42_RS11710 WP_100325309.1 2275712..2276782(-) (comGA) [Bacillus altitudinis strain 63-2-2]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAAGCCACAAAATGGATCATTGGCT
GTGATGTTAAGACGCGGTCAGGTGTTTGTTCGGCTCTCTACACTACCAACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAATATTTGTCACTGTTCCCGAAGGCTTCAACGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACATTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGGTGAATGAACTCGAACAAACAATGGTTGC
TATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.646