Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JNE42_RS11650 Genome accession   NZ_CP069098
Coordinates   2269545..2269880 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 63-2-2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2264545..2274880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE42_RS11630 (JNE42_11630) gcvT 2265021..2266118 (-) 1098 WP_203143450.1 glycine cleavage system aminomethyltransferase GcvT -
  JNE42_RS11635 (JNE42_11635) - 2266680..2268350 (+) 1671 WP_024718849.1 DEAD/DEAH box helicase -
  JNE42_RS11640 (JNE42_11640) - 2268365..2269162 (+) 798 WP_017367588.1 YqhG family protein -
  JNE42_RS11645 (JNE42_11645) - 2269347..2269511 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  JNE42_RS11650 (JNE42_11650) sinR 2269545..2269880 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  JNE42_RS11655 (JNE42_11655) tasA 2269948..2270748 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  JNE42_RS11660 (JNE42_11660) sipW 2270807..2271379 (-) 573 WP_058336655.1 signal peptidase I SipW -
  JNE42_RS11665 (JNE42_11665) tapA 2271429..2271956 (-) 528 WP_100325311.1 amyloid fiber anchoring/assembly protein TapA -
  JNE42_RS11670 (JNE42_11670) - 2272209..2272535 (+) 327 WP_100325310.1 DUF3889 domain-containing protein -
  JNE42_RS11675 (JNE42_11675) - 2272570..2272764 (-) 195 WP_024718846.1 YqzE family protein -
  JNE42_RS11680 (JNE42_11680) - 2272825..2273208 (-) 384 WP_058336652.1 competence type IV pilus minor pilin ComGG -
  JNE42_RS11685 (JNE42_11685) comGF 2273205..2273702 (-) 498 WP_039166031.1 competence type IV pilus minor pilin ComGF -
  JNE42_RS11690 (JNE42_11690) comGE 2273644..2273958 (-) 315 WP_007501227.1 competence type IV pilus minor pilin ComGE -
  JNE42_RS11695 (JNE42_11695) comGD 2273942..2274388 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  JNE42_RS11700 (JNE42_11700) comGC 2274381..2274674 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=532330 JNE42_RS11650 WP_017357978.1 2269545..2269880(+) (sinR) [Bacillus altitudinis strain 63-2-2]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=532330 JNE42_RS11650 WP_017357978.1 2269545..2269880(+) (sinR) [Bacillus altitudinis strain 63-2-2]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928