Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JM952_RS06880 Genome accession   NZ_CP069085
Coordinates   1634408..1634926 (+) Length   172 a.a.
NCBI ID   WP_011037865.1    Uniprot ID   Q8P778
Organism   Xanthomonas campestris pv. campestris strain BJSJQ20200612     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1629408..1639926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM952_RS06865 (JM952_06885) murD 1630527..1631933 (+) 1407 WP_011037868.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JM952_RS06870 (JM952_06890) - 1632087..1632887 (+) 801 WP_019237462.1 dienelactone hydrolase family protein -
  JM952_RS06875 (JM952_06895) - 1633129..1634127 (-) 999 WP_011037866.1 polyprenyl synthetase family protein -
  JM952_RS06880 (JM952_06900) ssb 1634408..1634926 (+) 519 WP_011037865.1 single-stranded DNA-binding protein Machinery gene
  JM952_RS06885 - 1635121..1635501 (-) 381 WP_227971259.1 hypothetical protein -
  JM952_RS06890 (JM952_06910) - 1635539..1636345 (+) 807 WP_012437816.1 MipA/OmpV family protein -
  JM952_RS06895 (JM952_06915) - 1636404..1637375 (+) 972 WP_012437817.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  JM952_RS06900 (JM952_06920) - 1637515..1638198 (+) 684 WP_197708554.1 response regulator transcription factor -
  JM952_RS06905 (JM952_06925) - 1638195..1639571 (+) 1377 WP_012437819.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18632.53 Da        Isoelectric Point: 5.3177

>NTDB_id=532286 JM952_RS06880 WP_011037865.1 1634408..1634926(+) (ssb) [Xanthomonas campestris pv. campestris strain BJSJQ20200612]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRTQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAP
PMDDFADDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=532286 JM952_RS06880 WP_011037865.1 1634408..1634926(+) (ssb) [Xanthomonas campestris pv. campestris strain BJSJQ20200612]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGTGGCGGCGGCATGGGCGGCGATCGCCCGCAGCGCACGCAGGCCCCGCGCCAGC
AGCAGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCG
CCGATGGACGATTTTGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P778

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.237

100

0.5
  ssb Glaesserella parasuis strain SC1401

46.703

100

0.494
  ssb Neisseria meningitidis MC58

45.506

100

0.471
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.471