Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JOA57_RS06980 Genome accession   NZ_CP069084
Coordinates   1672974..1673489 (+) Length   171 a.a.
NCBI ID   WP_040940953.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain GSXT20191014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1667974..1678489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA57_RS06965 (JOA57_06955) murD 1669093..1670499 (+) 1407 WP_237349797.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  JOA57_RS06970 (JOA57_06960) - 1670653..1671453 (+) 801 WP_019237462.1 dienelactone hydrolase family protein -
  JOA57_RS06975 (JOA57_06965) - 1671694..1672692 (-) 999 WP_011037866.1 polyprenyl synthetase family protein -
  JOA57_RS06980 (JOA57_06970) ssb 1672974..1673489 (+) 516 WP_040940953.1 single-stranded DNA-binding protein Machinery gene
  JOA57_RS06985 (JOA57_06975) - 1673681..1673977 (+) 297 WP_223646011.1 hypothetical protein -
  JOA57_RS06990 (JOA57_06980) - 1673981..1675996 (+) 2016 WP_237349798.1 McrB -
  JOA57_RS06995 (JOA57_06985) - 1675987..1676967 (+) 981 WP_100097274.1 IS5 family transposase -
  JOA57_RS07000 (JOA57_06990) - 1677040..1677672 (+) 633 WP_237349799.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18575.48 Da        Isoelectric Point: 5.3177

>NTDB_id=532268 JOA57_RS06980 WP_040940953.1 1672974..1673489(+) (ssb) [Xanthomonas campestris pv. campestris strain GSXT20191014]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRTQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAPP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=532268 JOA57_RS06980 WP_040940953.1 1672974..1673489(+) (ssb) [Xanthomonas campestris pv. campestris strain GSXT20191014]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTTGGAAAATTGGGCGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTAGAGAAGTACAGCACCGACATTGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCATGGGCGGCGATCGCCCGCAGCGCACGCAGGCCCCGCGCCAGCAGC
AGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCGCCG
ATGGACGATTTTGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.032

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.48
  ssb Neisseria meningitidis MC58

45.506

100

0.474
  ssb Neisseria gonorrhoeae MS11

45.506

100

0.474