Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JN168_RS12800 Genome accession   NZ_CP069082
Coordinates   2696209..2696724 (-) Length   171 a.a.
NCBI ID   WP_042737620.1    Uniprot ID   A0A0D0SUB4
Organism   Staphylococcus gallinarum strain STP534     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2691209..2701724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN168_RS12800 ssbA 2696209..2696724 (-) 516 WP_042737620.1 single-stranded DNA-binding protein Machinery gene
  JN168_RS12805 rpsF 2696743..2697048 (-) 306 WP_107511898.1 30S ribosomal protein S6 -
  JN168_RS12810 - 2697459..2698250 (+) 792 WP_042737622.1 GH25 family lysozyme -
  JN168_RS12815 ychF 2698543..2699640 (-) 1098 WP_042737623.1 redox-regulated ATPase YchF -
  JN168_RS12820 - 2699641..2699856 (-) 216 WP_042737624.1 DUF951 domain-containing protein -
  JN168_RS12825 - 2699878..2700762 (-) 885 WP_042737625.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18950.49 Da        Isoelectric Point: 4.5778

>NTDB_id=532258 JN168_RS12800 WP_042737620.1 2696209..2696724(-) (ssbA) [Staphylococcus gallinarum strain STP534]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKGQNQRQQQDGNNNFQDYGQGFGGQQSGQNTSYQNNNNPSNNNGQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=532258 JN168_RS12800 WP_042737620.1 2696209..2696724(-) (ssbA) [Staphylococcus gallinarum strain STP534]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACCCTAGCGGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTTT
TCAGAAAGCAAGCAGAGAATGTAAATAATTATCTTTCAAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGACGTCGTATTTTTGTAACAGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAGG
ACAAAACCAACGTCAACAACAGGATGGAAATAACAATTTCCAAGACTATGGCCAAGGTTTTGGTGGACAACAATCTGGAC
AAAACACGTCTTATCAAAATAACAACAACCCATCAAATAACAATGGACAATCAGATAATCCATTTGCAAATGCAAATGGT
CCGATTGACATTAGTGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0SUB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.111

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.579
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

61.988

0.38
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.368