Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   JOA01_RS04505 Genome accession   NZ_CP069079
Coordinates   878215..879588 (+) Length   457 a.a.
NCBI ID   WP_217375053.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 873215..884588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS10145 - 874756..875414 (-) 659 Protein_852 transposase -
  JOA01_RS10150 - 875521..876261 (-) 741 Protein_853 transposase -
  JOA01_RS04480 (JOA01_04485) - 876215..876421 (-) 207 WP_105108462.1 hypothetical protein -
  JOA01_RS04485 (JOA01_04490) tnpB 876475..876825 (-) 351 WP_217375050.1 IS66 family insertion sequence element accessory protein TnpB -
  JOA01_RS04490 (JOA01_04495) - 876806..876991 (-) 186 WP_217375051.1 hypothetical protein -
  JOA01_RS04495 (JOA01_04500) - 877188..877418 (+) 231 WP_217375052.1 hypothetical protein -
  JOA01_RS04500 (JOA01_04505) ciaR 877551..878222 (+) 672 WP_130555646.1 response regulator transcription factor Regulator
  JOA01_RS04505 (JOA01_04510) ciaH 878215..879588 (+) 1374 WP_217375053.1 cell wall metabolism sensor histidine kinase WalK Regulator
  JOA01_RS04510 (JOA01_04515) - 879676..880893 (+) 1218 WP_217375054.1 transglutaminase domain-containing protein -
  JOA01_RS04515 (JOA01_04520) rpsT 880927..881175 (-) 249 WP_217375055.1 30S ribosomal protein S20 -
  JOA01_RS04520 (JOA01_04525) coaA 881234..882154 (-) 921 WP_217375056.1 type I pantothenate kinase -
  JOA01_RS04525 (JOA01_04530) - 882230..882820 (+) 591 WP_217375057.1 class I SAM-dependent methyltransferase -
  JOA01_RS04530 (JOA01_04535) - 882817..884094 (+) 1278 WP_217375058.1 pyrimidine-nucleoside phosphorylase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 51573.76 Da        Isoelectric Point: 5.2321

>NTDB_id=532171 JOA01_RS04505 WP_217375053.1 878215..879588(+) (ciaH) [Streptococcus parasuis strain BS26]
MSKRFKKIISTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMYQTSDSTLARIKDAPTLVVGFAIARTYEPNSEFIIQD
GNIADESDSAESNSYTPNSPKNQKDDQLKLGYNTHVLLYSKDGQVVNPDNFTGLSDLSLDKKNLGEIKEVTVDSTFGSSE
DYRYVTIELAPDDLGYYSSYDIKYATIFVNVSQIKSSIETYETAVAIVMVSAWLISILASIYLSNLSMRPILISYQKQKD
FVENASHELRTPLAVLQNRLEGLFRHPNATILESSESIGSSLEEVRNMRMLTTNLLNLARRDDGFKLDIVEVPPSYFDEI
FENYMMIADENGKTVTVNNLIDQPIRTDKVLVKQLLTILFDNAMKYTEDDGAIQVTANIKDKLVYFTVADNGLGISDSDK
KKIFDRFYRVDKARTRSKGGFGLGLSLALQISNSLKGTITVRDNQPKGTIFEVRLPR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=532171 JOA01_RS04505 WP_217375053.1 878215..879588(+) (ciaH) [Streptococcus parasuis strain BS26]
ATGTCTAAGCGATTTAAAAAAATCATTTCAACAGATAAATTTTCCTTTTTTATCAGATATTTTGCTGTTTTTACACTCAT
TTTCGGATTAATGACCGCCATTATCTTCCAGTTAATGCGCTCAACTATGTATCAGACTTCTGATTCAACACTGGCTCGTA
TCAAAGATGCCCCTACTTTGGTGGTTGGTTTTGCCATTGCACGGACCTATGAACCAAATTCAGAATTCATTATTCAAGAT
GGAAATATTGCTGATGAAAGTGATTCTGCAGAATCTAATTCATATACACCAAACTCCCCTAAAAATCAGAAAGACGATCA
GTTGAAACTTGGTTACAATACACATGTATTGCTTTATTCAAAAGATGGTCAAGTAGTTAACCCTGATAACTTTACCGGTT
TGTCTGATTTATCCTTAGACAAGAAAAATTTAGGCGAAATAAAGGAAGTAACGGTTGATTCTACATTCGGGAGTTCAGAA
GATTATCGTTATGTTACTATTGAATTGGCGCCAGATGACCTTGGCTATTATTCTTCCTATGATATTAAATACGCGACAAT
TTTCGTGAATGTGAGTCAGATAAAATCATCCATTGAGACGTATGAAACTGCTGTAGCTATTGTCATGGTATCTGCTTGGC
TTATTTCCATCTTGGCTAGTATTTATCTGTCAAATTTGAGTATGCGACCTATCTTGATTAGCTATCAAAAACAAAAGGAT
TTCGTTGAGAATGCTAGTCATGAATTGAGAACGCCTTTAGCTGTGTTACAGAATCGTTTGGAAGGTCTTTTTAGACATCC
AAATGCAACCATTTTGGAAAGTAGTGAGAGTATAGGATCAAGCCTGGAGGAAGTTCGTAATATGCGTATGTTAACTACGA
ATTTACTGAATTTAGCTCGTCGAGATGATGGTTTCAAATTAGATATAGTTGAAGTCCCACCTAGCTATTTTGATGAAATC
TTTGAGAATTACATGATGATTGCAGATGAAAATGGTAAAACAGTCACGGTTAATAATTTGATTGATCAACCAATTCGGAC
GGATAAGGTGTTGGTAAAACAGCTTCTAACCATCCTATTTGATAATGCAATGAAGTATACCGAAGATGATGGCGCTATAC
AAGTGACAGCCAATATCAAAGATAAGTTAGTTTACTTTACGGTAGCAGACAATGGATTGGGTATCAGTGATAGTGATAAA
AAGAAAATTTTCGATCGATTTTATCGTGTAGACAAGGCCCGTACTCGGAGCAAGGGTGGGTTTGGTCTCGGTTTATCCTT
AGCCTTACAAATTTCCAATAGTTTGAAAGGCACAATCACTGTGCGGGATAATCAGCCTAAAGGAACTATTTTTGAGGTAA
GATTACCGAGATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(348-456)

His Kinase A (phospho-acceptor) domain (HisKA)

(238-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus pneumoniae Rx1

51.316

99.781

0.512
  ciaH Streptococcus pneumoniae D39

51.316

99.781

0.512
  ciaH Streptococcus pneumoniae R6

51.316

99.781

0.512
  ciaH Streptococcus pneumoniae TIGR4

51.316

99.781

0.512
  ciaH Streptococcus mutans UA159

50.552

99.125

0.501