Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JNX03_RS03740 Genome accession   NZ_CP069004
Coordinates   776936..777454 (-) Length   172 a.a.
NCBI ID   WP_203211105.1    Uniprot ID   -
Organism   Sulfitobacter mediterraneus strain SC1-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 771936..782454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNX03_RS03725 (JNX03_03725) - 772147..772743 (+) 597 WP_203211102.1 shikimate kinase -
  JNX03_RS03730 (JNX03_03730) aroB 772736..773851 (+) 1116 WP_203211103.1 3-dehydroquinate synthase -
  JNX03_RS03735 (JNX03_03735) - 773861..776815 (-) 2955 WP_203211104.1 methyl-accepting chemotaxis protein -
  JNX03_RS03740 (JNX03_03740) ssb 776936..777454 (-) 519 WP_203211105.1 single-stranded DNA-binding protein Machinery gene
  JNX03_RS03745 (JNX03_03745) - 777659..778258 (+) 600 WP_203211106.1 lytic transglycosylase domain-containing protein -
  JNX03_RS03750 (JNX03_03750) - 778428..778952 (+) 525 WP_203211107.1 hypothetical protein -
  JNX03_RS03755 (JNX03_03755) - 779006..781096 (-) 2091 WP_203211108.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17880.40 Da        Isoelectric Point: 5.0012

>NTDB_id=531965 JNX03_RS03740 WP_203211105.1 776936..777454(-) (ssb) [Sulfitobacter mediterraneus strain SC1-11]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKEKTEWHSVAIFQEGLVRIAEQYLKKGSKVYI
EGQLQTRKWQDQSGNDRYSTEVVLQGYGGTLTMLDGRDGGSGGGGGGYGGGSGGGDYGGGGYDSGNGGGGYDSGPSGGGG
GGSRDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=531965 JNX03_RS03740 WP_203211105.1 776936..777454(-) (ssb) [Sulfitobacter mediterraneus strain SC1-11]
ATGGCCGGTTCAGTTAACAAAGTGATCCTTATCGGCAATCTGGGGCGTGATCCCGAGGTACGGTCGTTTCAAAATGGCGG
CAAGGTTTGCAATCTGCGCATCGCCACCTCCGAGACATGGAAAGACCGCAACACCGGTGAACGCAAAGAGAAAACGGAAT
GGCATTCTGTGGCCATCTTTCAAGAAGGTCTTGTGCGGATTGCCGAACAATACCTCAAGAAAGGCTCCAAAGTTTACATT
GAGGGACAGCTGCAAACCCGAAAATGGCAGGATCAGTCGGGCAATGACCGGTATAGCACCGAAGTTGTGCTGCAAGGCTA
TGGTGGCACGCTGACCATGCTGGATGGCCGCGATGGTGGCTCCGGCGGCGGTGGTGGCGGCTATGGCGGCGGTTCCGGTG
GCGGCGATTACGGCGGCGGCGGTTATGACAGCGGCAATGGCGGCGGCGGTTACGACAGTGGCCCGTCGGGTGGCGGCGGC
GGCGGTTCCCGCGATCTGGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.179

100

0.535
  ssb Glaesserella parasuis strain SC1401

45.161

100

0.488
  ssb Neisseria meningitidis MC58

43.017

100

0.448
  ssb Neisseria gonorrhoeae MS11

43.017

100

0.448